当前解析结果
SmilChr04G003579| 统一新 Gene ID | SmilChr04G003579 |
|---|---|
| 名称 | SmilChr04G003579 |
| 描述 | uncharacterized SmilChr04G003579 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52212749 - 52216297 / + |
| NCBI Gene ID | LOC131020460 |
|---|---|
| GeneID | 131020460 |
| locus_tag | - |
| NCBI Name | LOC131020460 |
| 原始查询 | SmilChr04G003579 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0568700; species=rice; confidence=medium |
| 产物 | hit=Os11g0568700; species=rice; confidence=medium |
| Arabidopsis | AT5G06440 (AT5G06440)polyketide cyclase/dehydrase/lipid transport superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830532] identity=44.8; qcov=0.931; evalue=5.24e-128; confidence=medium |
| Rice | Os11g0568700- identity=45; qcov=0.958; evalue=2.63e-131; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020460 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057805257.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057805257.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805257.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805257.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805257.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52213750 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | D6 |
Chr4:52213750 |
G |
GA |
1bp_insertion | CDS_variant | 1 | D6 |
Chr4:52213895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr4:52214139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:52214160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:52214792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,D4 |
Chr4:52215029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,B6,C63 |
Chr4:52215080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,C21,C40,C81 |
Chr4:52215300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C40 |
Chr4:52215663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:52216095 |
AGG |
A |
2bp_deletion | frameshift_variant | 1 | C40 |
Chr4:52216095 |
AGG |
A |
2bp_deletion | CDS_variant | 1 | C40 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。