当前解析结果
SmilChr04G003588| 统一新 Gene ID | SmilChr04G003588 |
|---|---|
| 名称 | SmilChr04G003588 |
| 描述 | uncharacterized SmilChr04G003588 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52317441 - 52318620 / - |
| NCBI Gene ID | LOC131020467 |
|---|---|
| GeneID | 131020467 |
| locus_tag | - |
| NCBI Name | LOC131020467 |
| 原始查询 | SmilChr04G003588 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820341]; symbol=AT3G11690; hit=AT3G11690; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820341]; symbol=AT3G11690; hit=AT3G11690; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G11690 (AT3G11690)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820341] identity=35.9; qcov=1.13; evalue=2.17e-18; confidence=low |
| Rice | Os12g0621400- identity=31.5; qcov=0.847; evalue=5.78e-07; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020467 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057805264.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057805264.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805264.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805264.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805264.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52317791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B57,B63,C12,C53 |
Chr4:52317828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr4:52318068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B82 |
Chr4:52318161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:52318177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B21,B51,B77,C75,D1 |
Chr4:52318196 |
GC |
G |
1bp_deletion | frameshift_variant | 12 | A16,A25,B13,B134,B136,B35,B56,B68,B71,B80,B98,C23 |
Chr4:52318199 |
C |
CG |
1bp_insertion | frameshift_variant | 11 | A16,A25,B13,B134,B35,B56,B68,B71,B80,B98,C23 |
Chr4:52318203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B35,B71,B80,C23 |
Chr4:52318206 |
A |
ATT |
2bp_insertion | frameshift_variant | 4 | B35,B71,B80,C23 |
Chr4:52318206 |
A |
ATT |
2bp_insertion | CDS_variant | 4 | B35,B71,B80,C23 |
Chr4:52318214 |
T |
TA |
1bp_insertion | frameshift_variant | 4 | A25,B13,B56,B98 |
Chr4:52318214 |
T |
TA |
1bp_insertion | CDS_variant | 4 | A25,B13,B56,B98 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。