Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003589`

染色体: Chr04 坐标: 52321623-52322451 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003589`
名称	SmilChr04G003589
描述	uncharacterized SmilChr04G003589
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52321623 - 52322451 / `-`

ID 对照

NCBI Gene ID	`LOC131020468`
GeneID	`131020468`
locus_tag	`-`
NCBI Name	`LOC131020468`
原始查询	`SmilChr04G003589`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824401]; symbol=AT3G52360; hit=AT3G52360; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824401]; symbol=AT3G52360; hit=AT3G52360; species=arabidopsis; confidence=low
Arabidopsis	`AT3G52360` (AT3G52360) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824401] identity=62.9; qcov=0.574; evalue=3.07e-15; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131020468

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.40000	`XP_057805265.1`
2	Nucleus	细胞核	0.20000	`XP_057805265.1`
3	Nucleus membrane	核膜	0.20000	`XP_057805265.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057805265.1`
5	Chromosome	染色体	0.00000	`XP_057805265.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52321850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:52321870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B58
`Chr4:52321913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr4:52322118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949284.1
AAAAACGGACAGAGAATATAAGAAAACTGTGGACACCTTTAACCAAAGAATCCAATATTTTCCAAACAAAAATCTTCTTCCATTTTATATCATAACTTCCGCCCAATGCTTCCTCCCTTTGTTCTGATTAGATTCTTCAAATCTAGTAAATGGTTTTTATCTTAGCCAACAACAATAATCTTTTGATTATACAGATACATATATTATATGAAAAACAGATAAAAACCCCATTTCAACAATGGATTCTTCAATGAAAACTG...

XM_057949282.1
ACACCTTTAACCAAAGAATCCAATATTTTCCAAACAAAAATCTTCTTCCATTTTATATCATAACTTCCGCCCAATGCTTCCTCCCTTTGTTCTGATTAGATTCTTCAAATCTAGTAAATGGTTTTTATCTTAGCCAACAACAATAATCTTTTGATTATACAGATACATATATTATATGAAAAACAGATAAAAACCCCATTTCAACAATGGATTCTTCAATGAAAACTGGTTTAATGACAGTTTTTGCAGTTTCTGGGAGC...

CDS

2 records

下载 CDS FASTA

LOC131020468
ATGGATTCTTCAATGAAAACTGGTTTAATGACAGTTTTTGCAGTTTCTGGGAGCGTGGTTTTCGTGGCCATGCAAGTCCACAAACGCCTCCTTTCCAAATTCATGGAGAAAATCGAATATGAAATCGAGACGGCGTCGAAAGAAGAGCCAAAGAAGAAGGTGAGATTCGCAGATGACGTGGCAGAAACGGAAAATCGGAAGGTTTGCGAGAAGGCGGCGGAATCTGGCAAATTTAACGATGAGAATTTGGAGGCTTTGCC...

LOC131020468
ATGGATTCTTCAATGAAAACTGGTTTAATGACAGTTTTTGCAGTTTCTGGGAGCGTGGTTTTCGTGGCCATGCAAGTCCACAAACGCCTCCTTTCCAAATTCATGGAGAAAATCGAATATGAAATCGGTAATTCGACAGAGACGGCGTCGAAAGAAGAGCCAAAGAAGAAGGTGAGATTCGCAGATGACGTGGCAGAAACGGAAAATCGGAAGGTTTGCGAGAAGGCGGCGGAATCTGGCAAATTTAACGATGAGAATTT...

Protein

2 records

下载 Protein FASTA

XP_057805265.1
MDSSMKTGLMTVFAVSGSVVFVAMQVHKRLLSKFMEKIEYEIGNSTETASKEEPKKKVRFADDVAETENRKVCEKAAESGKFNDENLEALPENWQAMYREILHQRNYLRTCN

XP_057805267.1
MDSSMKTGLMTVFAVSGSVVFVAMQVHKRLLSKFMEKIEYEIETASKEEPKKKVRFADDVAETENRKVCEKAAESGKFNDENLEALPENWQAMYREILHQRNYLRTCN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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