Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003590`

染色体: Chr04 坐标: 52325883-52336260 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003590`
名称	SmilChr04G003590
描述	prolycopene isomerase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52325883 - 52336260 / `+`

ID 对照

NCBI Gene ID	`LOC131020470`
GeneID	`131020470`
locus_tag	`-`
NCBI Name	`LOC131020470`
原始查询	`SmilChr04G003590`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	prolycopene isomerase, chloroplastic
产物	prolycopene isomerase%2C chloroplastic
Arabidopsis	`AT1G06820` (CRTISO) carotenoid isomerase [Source:NCBI gene (formerly Entrezgene);Acc:837193] identity=83.7; qcov=0.837; evalue=0; confidence=high
Rice	`Os11g0572700` (OsCRTISO) - identity=82; qcov=0.829; evalue=0; confidence=high
GO	GO:0016117 (carotenoid biosynthetic process); GO:0016491 (oxidoreductase activity); GO:0046608 (carotenoid isomerase activity)
KEGG	smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00890 (FAD_binding_2); PF01593 (Amino_oxidase); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:131020470

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057805274.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057805274.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057805274.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057805274.1`
5	Nucleus	细胞核	0.00000	`XP_057805274.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52326538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C72
`Chr4:52326633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B130,B57,B63,C12,C53
`Chr4:52326649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B85
`Chr4:52327850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B48,B60,C29
`Chr4:52328675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:52329069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:52329205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:52329373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:52329399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:52329462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B41,B85
`Chr4:52329687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805274.1

609 aa

304

609

FAD_binding_2

NAD_binding_8

Amino_oxidase

PF00890 FAD_binding_2 93-123 aa PF13450 NAD_binding_8 96-157 aa PF01593 Amino_oxidase 101-581 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805274.1`	Pfam	`PF00890`	FAD_binding_2	Domain	93	123	5e-08	33.3	FAD binding domain
`XP_057805274.1`	Pfam	`PF13450`	NAD_binding_8	Domain	96	157	2.2e-13	51.0	NAD(P)-binding Rossmann-like domain
`XP_057805274.1`	Pfam	`PF01593`	Amino_oxidase	Domain	101	581	1.9e-20	74.3	Flavin containing amine oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009100712.1
GAATTCGGTAATGCGAGTTTTTGTCTCATTTAAGAAGAATCAATCTGTAAATGGAATCTTCACCCGAAATAATGCCAATTCATCCACAGCTGAACTCTGAATTTTGCTTCAATTTCCTTCCAAATACTCCCAAATCAGTATTTGATGCAATTAAACCTCTCATTAAACCCAACCGCCGCTCACCTAACTCAATCACACACCAAAATAGCTCAAACTTTTTTCAGCCAAACTATGTTTTTTAAATAGCAGATTTCAATGAC...

XM_057949291.1
TGTGTCCCCTGAAGAATAGGGAAATGGAGCCAATACAAAGCTCATAAATAGAATTAAATAATTCTGGAATTCGGTAATGCGAGTTTTTGTCTCATTTAAGAAGAATCAATCTGTAAATGGAATCTTCACCCGAAATAATGCCAATTCATCCACAGCTGAACTCTGAATTTTGCTTCAATTTCCTTCCAAATACTCCCAAATCAGTATTTGATGCAATTAAACCTCTCATTAAACCCAACCGCCGCTCACCTAACTCAATC...

CDS

1 records

下载 CDS FASTA

LOC131020470
ATGAGCATCGTCAGTTCTGGGGTTTCTTTTCATCAGTCAATTGTAAGTAACTGCAAGCCTGAGGCATTGAGCAACCGAAAACCCAGAAACCAAAGACACAGAAATTTGTGTTTGAACCATTTGAAATCCTTGAATTTAAGTAATGATGGCTTGGAATTTGGGGTCAGCAGGGGCAAGGATGAGAAAAGAGGCAGTCTTTTTAGGTTGAAATCAGCTGTTGATGTTGGCGAAGTGGTAGAGAGTTATGGTACAGGTGAGAG...

Protein

1 records

下载 Protein FASTA

XP_057805274.1
MSIVSSGVSFHQSIVSNCKPEALSNRKPRNQRHRNLCLNHLKSLNLSNDGLEFGVSRGKDEKRGSLFRLKSAVDVGEVVESYGTGERDGCFYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYERDGFKFDVGSSVMFGFSDKGNLNLITQALAAVGCRLQVIPDPTTVHFHLPNGLSVQVDREYSKFTSELISKFPHEKEGILKFYGVCWKIFNALNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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