当前解析结果
SmilChr04G003602| 统一新 Gene ID | SmilChr04G003602 |
|---|---|
| 名称 | SmilChr04G003602 |
| 描述 | exocyst complex component EXO70A1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52453474 - 52460251 / - |
| NCBI Gene ID | LOC131020478 |
|---|---|
| GeneID | 131020478 |
| locus_tag | - |
| NCBI Name | LOC131020478 |
| 原始查询 | SmilChr04G003602 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70A1-like |
| 产物 | exocyst complex component EXO70A1-like |
| Arabidopsis | AT5G52340 (EXO70A2)exocyst subunit exo70 family protein A2 [Source:NCBI gene (formerly Entrezgene);Acc:835310] identity=71.8; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0157400 (OsEXO70A3)- identity=67.9; qcov=0.991; evalue=0; confidence=high |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020478 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057805283.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057805283.1 |
| 3 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057805283.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057805283.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057805283.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52453791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr4:52453809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr4:52454211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,C22,C83,C86 |
Chr4:52455043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B48,B60,C29 |
Chr4:52455963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,C62,C84 |
Chr4:52455984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B48,B60,C29 |
Chr4:52456292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:52456301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:52459748 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B137 |
Chr4:52459748 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B137 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805283.1PF20669
Exo70_N 70-152 aa
PF03081
Exo70_C 274-626 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805283.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 70 | 152 | 5.5e-20 | 72.1 | Exocyst complex component Exo70 N-terminal |
XP_057805283.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 274 | 626 | 1.5e-126 | 423.2 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。