Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003616`

染色体: Chr04 坐标: 52651856-52659360 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003616`
名称	SmilChr04G003616
描述	nuclear transcription factor Y subunit A-10-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52651856 - 52659360 / `-`

ID 对照

NCBI Gene ID	`LOC131020490`
GeneID	`131020490`
locus_tag	`-`
NCBI Name	`LOC131020490`
原始查询	`SmilChr04G003616`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit A-10-like
产物	nuclear transcription factor Y subunit A-10-like
Arabidopsis	`AT5G06510` (NF-YA10) nuclear factor Y, subunit A10 [Source:NCBI gene (formerly Entrezgene);Acc:830539] identity=33.1; qcov=1.01; evalue=3.22e-27; confidence=low
Rice	`Os12g0618600` (OsHAP2F) - identity=42.9; qcov=0.559; evalue=2.49e-26; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex)
KEGG	-
Pfam	PF02045 (CBFB_NFYA)
InterPro	-
eggNOG	-
NR	GeneID:131020490

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805320.1`
2	Nucleoplasm	核质	0.20000	`XP_057805320.1`
3	Chromosome	染色体	0.00000	`XP_057805320.1`
4	Centromere	着丝粒	0.00000	`XP_057805320.1`
5	Chromatin	染色质	0.00000	`XP_057805320.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52652293`	`CCG`	`C`	2bp_deletion	frameshift_variant	10	B106,B22,B29,B5,B53,B78,B79,C4,C82,C83
`Chr4:52652628`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C62
`Chr4:52652628`	`CT`	`C`	1bp_deletion	CDS_variant	1	C62
`Chr4:52652630`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C62
`Chr4:52652630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr4:52653001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:52653060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B99
`Chr4:52658061`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr4:52658162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805320.1

291 aa

146

291

CBFB_NFYA

PF02045 CBFB_NFYA 126-232 aa

XP_057805321.1

287 aa

144

287

CBFB_NFYA

PF02045 CBFB_NFYA 122-228 aa

XP_057805322.1

267 aa

134

267

CBFB_NFYA

PF02045 CBFB_NFYA 138-208 aa

XP_057805323.1

263 aa

132

263

CBFB_NFYA

PF02045 CBFB_NFYA 134-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805320.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	126	232	2.7e-31	109.1	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057805321.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	122	228	2.6e-31	109.1	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057805322.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	138	208	4.7e-30	105.1	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057805323.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	134	204	5.1e-30	105.0	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057949340.1
TCATAAAATTAAGCACTTGCATCATGAAATATTTATGTATTTCATTCTTTGGAGTTTTCGCACTCCTATACACTATACATATATATATGCCTTATTTACAGCTTTCTCTCACTCTCTCTCTGGGCGGCTGTTAATTACCTGTTTGAAATTTACCGACAGTTTTGGTGATTAATTGTTTCCTAGCTGAGACGGCTGTTCTATTTCCCCTTGTAAGATATCAGAATGACCATGCACGCTATTTTATTCAAAGAAAATGAAGG...

XM_057949338.1
TCATAAAATTAAGCACTTGCATCATGAAATATTTATGTATTTCATTCTTTGGAGTTTTCGCACTCCTATACACTATACATATATATATGCCTTATTTACAGCTTTCTCTCACTCTCTCTCTGGGCGGCTGTTAATTACCTGTTTGAAATTTACCGACAGTTTTGGTGATTAATTGTTTCCTAGCTGAGACGGCTGTTCTATTTCCCCTTGTAAGATATCAGAATGACCATGCACGCTATTTTATTCAAAGAAAATGAAGG...

CDS

4 records

下载 CDS FASTA

LOC131020490
ATGACCATGCACGCTATTTTATTCAAAGAAAATGAAGGGATTTTCCCAGATTCCATTAACGGGTCACAGGAAATTCCTCTGTGGAGTGCGGTGGGAGCTCAGCCGTCGCCGCCGCCGCGGCGGGCCGCCTTCCACAACCCTTTTCTGCAGTCGAAGGTGCTGTCTCTGGAACTTTCAGCCGGCAAAAATCTTCAGTTAGCTGTGGCTGATGAATCTGATGAAGATAAGCAAGTTCTTGCAAAGGAAGATTCCTCTCACTT...

Protein

4 records

下载 Protein FASTA

XP_057805320.1
MTMHAILFKENEGIFPDSINGSQEIPLWSAVGAQPSPPPRRAAFHNPFLQSKVLSLELSAGKNLQLAVADESDEDKQVLAKEDSSHFTVFPDYDLGDCRTGENGAKTVPSLQDASMEYEGQFKLGFGQPLICAQYPYNAEQCYGIYSAYGAQIEGSRMMLGGEGGPIYVNAKQYNAIMRRRRSRAKAESKNQDMKSRKPYMHLSRHLHAVRRHRGSGGRFLSAKSEDKTKAAGKRGKQEHQESQIESDGGKKTNSGGGGS...

XP_057805321.1
MTMHAILFKENEGIFPDSINGSQEIPLWSAVGAQPSPPPRRAAFHNPFLQSKVLSLELSAGKNLQLAVADESDEDKQVLAKEDSSHFTVFPGDCRTGENGAKTVPSLQDASMEYEGQFKLGFGQPLICAQYPYNAEQCYGIYSAYGAQIEGSRMMLGGEGGPIYVNAKQYNAIMRRRRSRAKAESKNQDMKSRKPYMHLSRHLHAVRRHRGSGGRFLSAKSEDKTKAAGKRGKQEHQESQIESDGGKKTNSGGGGSEVTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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