当前解析结果
SmilChr04G003619| 统一新 Gene ID | SmilChr04G003619 |
|---|---|
| 名称 | SmilChr04G003619 |
| 描述 | uncharacterized SmilChr04G003619 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52685380 - 52685910 / + |
| NCBI Gene ID | LOC131023607 |
|---|---|
| GeneID | 131023607 |
| locus_tag | - |
| NCBI Name | LOC131023607 |
| 原始查询 | SmilChr04G003619 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:830516]; symbol=AT5G06280; hit=AT5G06280; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:830516]; symbol=AT5G06280; hit=AT5G06280; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G06280 (AT5G06280)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:830516] identity=40.2; qcov=0.665; evalue=1.66e-15; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023607 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809132.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057809132.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057809132.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057809132.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057809132.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52685382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr4:52685400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B48,C2,C43,C56 |
Chr4:52685402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:52685409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B77,C17,C76 |
Chr4:52685412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B16,B70 |
Chr4:52685413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B98,C2,C45 |
Chr4:52685425 |
G |
GA |
1bp_insertion | frameshift_variant | 45 | A1,A10,A14,A5,A6,A9,B108,B109,B11,B122,B128,B13,B132,B33,B41,B58,B60,B81,B82,B87,B96,C10,C17,C19,C20,C26,C31,C34,C39,C46,C52,C54,C55,C57,C63,C64,C66,C70,C74,C77,C79,D1,D5,D8,D9 |
Chr4:52685439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B39,C13,D6 |
Chr4:52685447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B22,C34,C60,D5 |
Chr4:52685467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C55 |
Chr4:52685474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr4:52685477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B62,B65,B75 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。