当前解析结果
SmilChr04G003620| 统一新 Gene ID | SmilChr04G003620 |
|---|---|
| 名称 | SmilChr04G003620 |
| 描述 | uncharacterized SmilChr04G003620 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52691458 - 52695462 / + |
| NCBI Gene ID | LOC131020493 |
|---|---|
| GeneID | 131020493 |
| locus_tag | - |
| NCBI Name | LOC131020493 |
| 原始查询 | SmilChr04G003620 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820334]; symbol=AT3G11620; hit=AT3G11620; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820334]; symbol=AT3G11620; hit=AT3G11620; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G11620 (AT3G11620)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820334] identity=58.7; qcov=0.904; evalue=6.21e-136; confidence=high |
| Rice | Os01g0958800- identity=51.2; qcov=0.586; evalue=1.74e-71; confidence=medium |
| GO | GO:0005811 (lipid droplet); GO:0016298 (lipase activity); GO:0019915 (lipid storage) |
| KEGG | - |
| Pfam | PF10230 (LIDHydrolase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020493 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057805327.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057805327.1 |
| 3 | Lipid droplet | 脂滴 | 0.40000 | XP_057805327.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057805327.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057805327.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52691534 |
A |
AT |
1bp_insertion | frameshift_variant | 24 | A23,A6,A8,B107,B108,B119,B2,B25,B45,B64,B97,C15,C21,C23,C34,C37,C40,C51,C63,C64,C66,C79,C87,C9 |
Chr4:52691542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr4:52693632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:52693895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:52694447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:52694462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C45,C7 |
Chr4:52694487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C58 |
Chr4:52694780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C58 |
Chr4:52695167 |
A |
AG |
1bp_insertion | frameshift_variant | 24 | A23,A6,A8,B10,B107,B108,B119,B2,B25,B45,B64,B97,C15,C21,C23,C34,C40,C51,C63,C64,C66,C79,C87,C9 |
Chr4:52695223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr4:52695258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805327.1PF10230
LIDHydrolase 67-316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805327.1 |
Pfam | PF10230 |
LIDHydrolase | Family | 67 | 316 | 1.8e-69 | 235.2 | Lipid-droplet associated hydrolase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。