当前解析结果
SmilChr04G003641| 统一新 Gene ID | SmilChr04G003641 |
|---|---|
| 名称 | SmilChr04G003641 |
| 描述 | transcription factor RAX2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52888496 - 52891657 / + |
| NCBI Gene ID | LOC131020512 |
|---|---|
| GeneID | 131020512 |
| locus_tag | - |
| NCBI Name | LOC131020512 |
| 原始查询 | SmilChr04G003641 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor RAX2-like |
| 产物 | transcription factor RAX2-like |
| Arabidopsis | AT5G65790 (MYB68)myb domain protein 68 [Source:NCBI gene (formerly Entrezgene);Acc:836708] identity=88.2; qcov=0.48; evalue=5.69e-76; confidence=medium |
| Rice | Os03g0771100- identity=87.3; qcov=0.476; evalue=2.05e-74; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020512 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805347.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057805347.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057805347.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057805347.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057805347.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52889480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,D1 |
Chr4:52889524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B4,C5,C57,C67 |
Chr4:52889657 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C73 |
Chr4:52889657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:52889681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:52889736 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | B95,C14,C69 |
Chr4:52889736 |
C |
CT |
1bp_insertion | CDS_variant | 3 | B95,C14,C69 |
Chr4:52889785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B4,C5,C67 |
Chr4:52889811 |
CTG |
C |
2bp_deletion | frameshift_variant | 1 | B43 |
Chr4:52889811 |
CTG |
C |
2bp_deletion | CDS_variant | 1 | B43 |
Chr4:52890000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B21,B33,C26,C45 |
Chr4:52890352 |
AT |
A |
1bp_deletion | frameshift_variant | 13 | A10,B111,B27,B5,B7,B76,B77,B8,C11,C69,D3,D4,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805347.1PF00249
Myb_DNA-binding 14-62 aa
PF13921
Myb_DNA-bind_6 17-77 aa
PF00249
Myb_DNA-binding 69-111 aa
PF13921
Myb_DNA-bind_6 71-117 aa
XP_057805348.1PF00249
Myb_DNA-binding 14-62 aa
PF13921
Myb_DNA-bind_6 17-77 aa
PF00249
Myb_DNA-binding 69-111 aa
PF13921
Myb_DNA-bind_6 71-117 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805347.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 14 | 62 | 1.1e-31 | 109.4 | Myb-like DNA-binding domain |
XP_057805347.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 17 | 77 | 4.6e-19 | 69.1 | Myb-like DNA-binding domain |
XP_057805347.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 69 | 111 | 1.1e-31 | 109.4 | Myb-like DNA-binding domain |
XP_057805347.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 71 | 117 | 4.6e-19 | 69.1 | Myb-like DNA-binding domain |
XP_057805348.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 14 | 62 | 9.4e-32 | 109.6 | Myb-like DNA-binding domain |
XP_057805348.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 17 | 77 | 3.7e-19 | 69.4 | Myb-like DNA-binding domain |
XP_057805348.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 69 | 111 | 9.4e-32 | 109.6 | Myb-like DNA-binding domain |
XP_057805348.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 71 | 117 | 3.7e-19 | 69.4 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。