Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003642`

染色体: Chr04 坐标: 52907293-52913197 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003642`
名称	SmilChr04G003642
描述	ABC transporter B family member 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52907293 - 52913197 / `+`

ID 对照

NCBI Gene ID	`LOC131020514`
GeneID	`131020514`
locus_tag	`-`
NCBI Name	`LOC131020514`
原始查询	`SmilChr04G003642`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter B family member 1
产物	ABC transporter B family member 1
Arabidopsis	`AT2G36910` (ABCB1) ATP binding cassette subfamily B1 [Source:NCBI gene (formerly Entrezgene);Acc:818265] identity=84.6; qcov=0.997; evalue=0; confidence=high
Rice	`Os08g0564300` (OsABCB22) - identity=77.7; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:131020514

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057805349.1`
2	Vacuole	液泡	0.40000	`XP_057805349.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057805349.1`
4	Nucleus	细胞核	0.00000	`XP_057805349.1`
5	Chromosome	染色体	0.00000	`XP_057805349.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52907521`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A10
`Chr4:52907521`	`AC`	`A`	1bp_deletion	CDS_variant	1	A10
`Chr4:52907562`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B24
`Chr4:52907562`	`A`	`AT`	1bp_insertion	CDS_variant	1	B24
`Chr4:52907653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr4:52907680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:52907698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr4:52907730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C44
`Chr4:52907755`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:52907893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B48,B60,B98,C29
`Chr4:52908249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:52908259`	`G`	`GCT`	2bp_insertion	frameshift_variant	11	A10,B104,B107,B32,B74,C17,C29,C4,C51,C56,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805349.1

1325 aa

662

1325

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 100-372 aa PF00005 ABC_tran 440-589 aa PF00664 ABC_membrane 758-1024 aa PF00005 ABC_tran 1096-1245 aa

XP_057805350.1

1159 aa

580

1159

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 2-206 aa PF00005 ABC_tran 274-423 aa PF00664 ABC_membrane 592-858 aa PF00005 ABC_tran 930-1079 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805349.1`	Pfam	`PF00664`	ABC_membrane	Family	100	372	8.9e-103	344.4	ABC transporter transmembrane region
`XP_057805349.1`	Pfam	`PF00005`	ABC_tran	Domain	440	589	1.3e-72	243.5	ABC transporter
`XP_057805349.1`	Pfam	`PF00664`	ABC_membrane	Family	758	1024	8.9e-103	344.4	ABC transporter transmembrane region
`XP_057805349.1`	Pfam	`PF00005`	ABC_tran	Domain	1096	1245	1.3e-72	243.5	ABC transporter
`XP_057805350.1`	Pfam	`PF00664`	ABC_membrane	Family	2	206	5.5e-92	309.0	ABC transporter transmembrane region
`XP_057805350.1`	Pfam	`PF00005`	ABC_tran	Domain	274	423	8.9e-73	244.1	ABC transporter
`XP_057805350.1`	Pfam	`PF00664`	ABC_membrane	Family	592	858	5.5e-92	309.0	ABC transporter transmembrane region
`XP_057805350.1`	Pfam	`PF00005`	ABC_tran	Domain	930	1079	8.9e-73	244.1	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949366.1
AGAAGAAATTAATCGAGCAGCATAAAATAAAAAAGCACACACTCAGAGAGAGAGAGAGATGGCAGCCATTTGGAGAAGAAAGGAGTGTGGAAACGCCACTATTCTCATAATCGCAATCGAGTAACCGCGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGAGGTGGGCTGATCTTATGCAACTGTAAGCGTGAAGCTAAACACGCATGAAAGAGAAAAAAATGAGACAAGAAGATGGCGATGGGGAGGAGATAAAGA...

XM_057949367.1
AATTGGCACAGTTGGCGCGATCGTTCATGGCAGCTCCTTGCCTCTGTTTCTCCGATTCTTCGCCGATCTCGTTAATTCCTTCGGCTCCAATGCCGATAATGTCGATAAGATGTCGCAGGAGGTGTTGAAGTTGGAGCTGCTATTTGGGCATCTTCATGGGCAGAGATATCATGTTGGATGTGGAGTGGAGAGAGACAATCAACAAAGATGAGGATCGAATACTTGGAGGCTGCTCTGAACCAAGACATTCAGTTTTTCGA...

CDS

2 records

下载 CDS FASTA

LOC131020514
ATGAAAGAGAAAAAAATGAGACAAGAAGATGGCGATGGGGAGGAGATAAAGACGGTGCAGGAGCAGTGGAGATGGTCCGAACTGCAAGGCGTCGAGCTCGTCGTCTCATCTCACTCCGACACCTCGCCGCCGCCCAACCTCAACAACTCCAACGCTTCATCGTCAGCTGCCAATCCTAACCCGCCGTCAATGGAGCCCGACGGCGGCGGCGAACCGGAAAAAAAAGGTTCGCCGCCGCCCTCCGTCGCGTTCCGCGAGCT...

LOC131020514
ATGTGGAGTGGAGAGAGACAATCAACAAAGATGAGGATCGAATACTTGGAGGCTGCTCTGAACCAAGACATTCAGTTTTTCGACACCGAGGTTCGCACATCCGACGTCGTTTTCGCTATCAACACCGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGTTGGGGAATTTCTTGCATTACATGGCAACGTTTGTGTCTGGATTTGTGGTGGGATTCTCTGCAGTGTGGCAGCTAGCTCTGGTCACTCTTGCTGTAGT...

Protein

2 records

下载 Protein FASTA

XP_057805349.1
MKEKKMRQEDGDGEEIKTVQEQWRWSELQGVELVVSSHSDTSPPPNLNNSNASSSAANPNPPSMEPDGGGEPEKKGSPPPSVAFRELFRFADRLDYALMTIGTVGAIVHGSSLPLFLRFFADLVNSFGSNADNVDKMSQEVLKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIEYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFLHYMATFVSGFVVGFSAVWQLALVTLAVVPLIAVIG...

XP_057805350.1
MWSGERQSTKMRIEYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFLHYMATFVSGFVVGFSAVWQLALVTLAVVPLIAVIGAIHTITLAKLSGKSQEALSQAGNIAEQTLVQIRTVLAFVGESRALQDYSAALKVSQRIGYKSGFSKGMGLGATYFTVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMAAFAKARVAAAKIFRMIDHKPAVERNNDGVELESITGQVELRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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