Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003643`

染色体: Chr04 坐标: 52928623-52931310 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003643`
名称	SmilChr04G003643
描述	heavy metal-associated isoprenylated plant protein 6-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52928623 - 52931310 / `+`

ID 对照

NCBI Gene ID	`LOC131020515`
GeneID	`131020515`
locus_tag	`-`
NCBI Name	`LOC131020515`
原始查询	`SmilChr04G003643`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heavy metal-associated isoprenylated plant protein 6-like
产物	heavy metal-associated isoprenylated plant protein 6-like
Arabidopsis	`AT5G03380` (AT5G03380) Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831854] identity=37.1; qcov=1.08; evalue=5.64e-53; confidence=medium
Rice	`Os03g0152000` - identity=38.9; qcov=0.578; evalue=1.81e-30; confidence=medium
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00403 (HMA)
InterPro	-
eggNOG	-
NR	GeneID:131020515

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057805351.1`
2	Cell membrane	细胞膜	0.60000	`XP_057805351.1`
3	Nucleus	细胞核	0.20000	`XP_057805351.1`
4	Chromosome	染色体	0.00000	`XP_057805351.1`
5	Centromere	着丝粒	0.00000	`XP_057805351.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52928965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr4:52928981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr4:52930254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,A22,B25,B8,B81
`Chr4:52930667`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:52930690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B66,B93,C57,C65
`Chr4:52930783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B126,B19,B55,C43
`Chr4:52930794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:52930801`	`A`	`AAG`	2bp_insertion	frameshift_variant	3	B48,B60,B98
`Chr4:52930801`	`A`	`AAG`	2bp_insertion	CDS_variant	3	B48,B60,B98
`Chr4:52930813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B58,C34,C73
`Chr4:52930859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:52930874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805351.1

351 aa

176

351

HMA

PF00403 HMA 43-92 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805351.1`	Pfam	`PF00403`	HMA	Domain	43	92	8.9e-19	68.3	Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949368.1
GCTCTATGTATTTTCCATATAATTTTTTTTCATTTCTTTAAAATATTTCCAGGGCCCACATAACTTCATCAAAAACTCAGCTCTATATATCCCAGCGATTGCCTCCATTTTCTCTCTTCAAACAAATATTTACTCCACCAAAAAAAAGTAAAAAAAAAAAATATAGAAACTCATAAATCCTGCAGCAAATGGGCGAGAAAGTTGAGAAAAAGAATGAAGTAGAGAAGAACGCGGCGGCGGAGGGCGCCGTCGAGAAGGCG...

CDS

1 records

下载 CDS FASTA

LOC131020515
ATGGGCGAGAAAGTTGAGAAAAAGAATGAAGTAGAGAAGAACGCGGCGGCGGAGGGCGCCGTCGAGAAGGCGGCGGAGGGAGGCGGCGGAGAGAAAAAAGTGGCTCCCATGGCGGTGGTGTTGAAGATGGATTTACATTGCCAAGGCTGCGCCAAGAAAGTCAGACGCTCCGTTAGAAATTTGGAAGGTGTGGAGACGGTGAAGGCCGACTGTGACGCCAAGAAATTGACTGTGACGGGAAATGTGGACCCCGCATGGCT...

Protein

1 records

下载 Protein FASTA

XP_057805351.1
MGEKVEKKNEVEKNAAAEGAVEKAAEGGGGEKKVAPMAVVLKMDLHCQGCAKKVRRSVRNLEGVETVKADCDAKKLTVTGNVDPAWLREKVEIKTKKKVELISPQPKNDAGSGGAAAATDDKKAEEKKGEEDKPKKTAVSTVTMKTKLHCDGCAHKIKRIIIKNFDGVDSLTTDLQKDLIIAIGTMNVNDLVSYLREKLKRGVEIVPPKKDKDAAAAVDSKEKASGGGEQEKKDKESDVVGKGGGKQKQASGDAKEAEAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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