Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003653`

染色体: Chr04 坐标: 53012083-53016707 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003653`
名称	SmilChr04G003653
描述	cell division control protein 48 homolog E
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53012083 - 53016707 / `+`

ID 对照

NCBI Gene ID	`LOC131020526`
GeneID	`131020526`
locus_tag	`-`
NCBI Name	`LOC131020526`
原始查询	`SmilChr04G003653`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cell division control protein 48 homolog E
产物	cell division control protein 48 homolog E
Arabidopsis	`AT5G03340` (AtCDC48C) ATPase, AAA-type, CDC48 protein [Source:NCBI gene (formerly Entrezgene);Acc:831870] identity=92.5; qcov=1; evalue=0; confidence=high
Rice	`Os03g0151800` (OsCDC48) - identity=91.5; qcov=0.97; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016887 (ATP hydrolysis activity); GO:0030433 (GO:0030433); GO:0030970 (retrograde protein transport, ER to cytosol); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0034098 (VCP-NPL4-UFD1 AAA ATPase complex); GO:0051228 (mitotic spindle disassembly); GO:0071712 (GO:0071712); GO:0097352 (autophagosome maturation)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF02359 (CDC48_N); PF02933 (CDC48_2); PF07728 (AAA_5); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131020526

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057805373.1`
2	Nucleus	细胞核	0.80000	`XP_057805373.1`
3	Cytoplasm	细胞质	0.80000	`XP_057805373.1`
4	Chromosome	染色体	0.00000	`XP_057805373.1`
5	Centromere	着丝粒	0.00000	`XP_057805373.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53012343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:53013673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,A21,B124,B135,C78
`Chr4:53014332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr4:53015552`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	B103
`Chr4:53015552`	`TCG`	`T`	2bp_deletion	CDS_variant	1	B103
`Chr4:53015553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B127,B13,B28,D11
`Chr4:53015643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C10,C6
`Chr4:53015904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr4:53015947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,B140
`Chr4:53016487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr4:53016488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B55,C43
`Chr4:53016535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B114,B46,B52,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805373.1

808 aa

404

808

CDC48_N

CDC48_2

AAA_5

AAA

AAA_lid_3

AAA

AAA_lid_3

PF02359 CDC48_N 30-110 aa PF02933 CDC48_2 131-195 aa PF07728 AAA_5 245-363 aa PF00004 AAA 245-374 aa PF17862 AAA_lid_3 397-438 aa PF00004 AAA 518-651 aa PF17862 AAA_lid_3 673-712 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805373.1`	Pfam	`PF02359`	CDC48_N	Domain	30	110	2.4e-23	82.8	Cell division protein 48 (CDC48), N-terminal domain
`XP_057805373.1`	Pfam	`PF02933`	CDC48_2	Domain	131	195	7.7e-13	48.6	Cell division protein 48 (CDC48), domain 2
`XP_057805373.1`	Pfam	`PF07728`	AAA_5	Domain	245	363	1.9e-10	41.6	AAA domain (dynein-related subfamily)
`XP_057805373.1`	Pfam	`PF00004`	AAA	Domain	245	374	2.1e-97	323.3	ATPase family associated with various cellular activities (AAA)
`XP_057805373.1`	Pfam	`PF17862`	AAA_lid_3	Domain	397	438	6.6e-31	106.2	AAA+ lid domain
`XP_057805373.1`	Pfam	`PF00004`	AAA	Domain	518	651	2.1e-97	323.3	ATPase family associated with various cellular activities (AAA)
`XP_057805373.1`	Pfam	`PF17862`	AAA_lid_3	Domain	673	712	6.6e-31	106.2	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949390.1
AGAATCGAAATAGATGTATGCTTTACCCAACGTAGTAAAAGAAAGCAAGAGTCAAAAACCGAGTAGAAAAAGAGTTGCACATAAAATCAACCTTTTCTTTGGTAACAAGAAACGAAGCAATTTTCACTATATATTTCCCCAACTATTTCAGCTTCTACTACTCATTCACAGCATCTTCAATTCATCAACGAACTCCGACTTCTTCAGCAAATTTGCGTCTTTTCAGTAATCTGCACAATTCTGCTACCATGAGCAATCAA...

CDS

1 records

下载 CDS FASTA

LOC131020526
ATGAGCAATCAACCAGAGTCATCCGATCCTAGTAGCGCCAAGAAAGATTTCAGTACTGCGATTTTGGAGAGGAAGAAGGCGGCGAATCGGTTGGTGGTGGATGAGGCCATCAACGATGATAATTCTGTAGTTTCTCTTCACCCTGATACCATGGAGAAGCTCCAGATTTTCCGTGGCGACACCATCCTGATCAAGGGTAAGAAAAGAAAAGATACTGTCTGCATCGCCCTTGCTGAGGATACTTGTGAGCAACCAAAGAT...

Protein

1 records

下载 Protein FASTA

XP_057805373.1
MSNQPESSDPSSAKKDFSTAILERKKAANRLVVDEAINDDNSVVSLHPDTMEKLQIFRGDTILIKGKKRKDTVCIALAEDTCEQPKIRMNKVVRNNLRVRLGDVVSVHLCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVVETDPSEYCVVAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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