Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003671`

染色体: Chr04 坐标: 53167404-53170482 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003671`
名称	SmilChr04G003671
描述	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53167404 - 53170482 / `+`

ID 对照

NCBI Gene ID	`LOC131020548`
GeneID	`131020548`
locus_tag	`-`
NCBI Name	`LOC131020548`
原始查询	`SmilChr04G003671`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1
产物	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1
Arabidopsis	`AT2G28305` (LOG1) Putative lysine decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817376] identity=87.7; qcov=1; evalue=1.39e-104; confidence=high
Rice	`Os02g0628000` (LOGL2) - identity=82.2; qcov=1; evalue=1.95e-97; confidence=high
GO	GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0009691 (cytokinin biosynthetic process); GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
KEGG	-
Pfam	PF03641 (Lysine_decarbox); PF18306 (LDcluster4)
InterPro	-
eggNOG	-
NR	GeneID:131020548

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805426.1`
2	Cytoplasm	细胞质	1.00000	`XP_057805427.1`
3	Chromosome	染色体	0.00000	`XP_057805426.1`
4	Centromere	着丝粒	0.00000	`XP_057805426.1`
5	Chromatin	染色质	0.00000	`XP_057805426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53168406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr4:53168619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53169235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:53169281`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C8
`Chr4:53169281`	`T`	`TC`	1bp_insertion	CDS_variant	1	C8
`Chr4:53169761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53169773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr4:53169941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:53169978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53170152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805426.1

219 aa

110

219

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 16-145 aa PF03641 Lysine_decarbox 57-187 aa

XP_057805427.1

163 aa

163

Lysine_decarbox

PF03641 Lysine_decarbox 1-131 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805426.1`	Pfam	`PF18306`	LDcluster4	Family	16	145	2.6e-13	50.6	SLOG cluster4 family
`XP_057805426.1`	Pfam	`PF03641`	Lysine_decarbox	Family	57	187	1e-49	168.8	Possible lysine decarboxylase
`XP_057805427.1`	Pfam	`PF03641`	Lysine_decarbox	Family	1	131	4.3e-50	170.0	Possible lysine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949443.1
CTCTCTGTGTCGTATATGAGAGAGAGAGAGAGAGATAATTGTATGCGTGTGTATATATATACAGCGCGCAGATGGTGTGTGTAGAAGGGGAAGGGGACGCCATTTGAAGCAAATTTGTTGCCTTTATTCTAAGTTGTCACTCACATTTACATTTACAGATAGAAGACCAAACACATCAAAACACCAGAGAGAGAGAGAGAGAATGGAGAGAGAGAGTGAAGTGAAAACATCAAAGTTTAATACGATTTGTGTGTTCTGTG...

XM_057949444.1
ATATTATATGAATGTACAACTACAACAGCACATGCTGCATATATTGTTGTGGTCTCAAGGAACATTGATTTAGTGTATGGAGGAGGTAGCATAGGCCTAATGGGGTTGGTTTCTCAAGCTGTCCATGACGGCGGCCGCCACGTCACCGGAGTGATTCCCAAGACGCTCATGCCTCGAGAGTTAACTGGACAAACAGTAGGGAAAGTGAAGGCAGTTGCAGATATGCATCAAAGGAAAGCAGAAATGGCTAAGCATTCTGA...

CDS

2 records

下载 CDS FASTA

LOC131020548
ATGGAGAGAGAGAGTGAAGTGAAAACATCAAAGTTTAATACGATTTGTGTGTTCTGTGGCAGCAGCCAAGGCAACAAAGTCAGCTATCGAGAAGCAGCTATTGAACTCGGCAACGTTTTGGTCTCAAGGAACATTGATTTAGTGTATGGAGGAGGTAGCATAGGCCTAATGGGGTTGGTTTCTCAAGCTGTCCATGACGGCGGCCGCCACGTCACCGGAGTGATTCCCAAGACGCTCATGCCTCGAGAGTTAACTGGACA...

LOC131020548
ATGGGGTTGGTTTCTCAAGCTGTCCATGACGGCGGCCGCCACGTCACCGGAGTGATTCCCAAGACGCTCATGCCTCGAGAGTTAACTGGACAAACAGTAGGGAAAGTGAAGGCAGTTGCAGATATGCATCAAAGGAAAGCAGAAATGGCTAAGCATTCTGATGCTTTTATTGCCTTACCAGGTGGTTATGGAACTCTAGAGGAACTGCTTGAAGTCATAACATGGGCTCAGCTCGGCATCCATGATAAGCCGGTAGGTTT...

Protein

2 records

下载 Protein FASTA

XP_057805426.1
MERESEVKTSKFNTICVFCGSSQGNKVSYREAAIELGNVLVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVTGVIPKTLMPRELTGQTVGKVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEEYVPRHERVASKLNWEMEQQLGYSQNCDISR

XP_057805427.1
MGLVSQAVHDGGRHVTGVIPKTLMPRELTGQTVGKVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEEYVPRHERVASKLNWEMEQQLGYSQNCDISR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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