当前解析结果
SmilChr04G003672| 统一新 Gene ID | SmilChr04G003672 |
|---|---|
| 名称 | SmilChr04G003672 |
| 描述 | uncharacterized SmilChr04G003672 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53172075 - 53176579 / + |
| NCBI Gene ID | LOC131020546 |
|---|---|
| GeneID | 131020546 |
| locus_tag | - |
| NCBI Name | LOC131020546 |
| 原始查询 | SmilChr04G003672 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | snurportin-1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828590]; symbol=AT4G24880; hit=AT4G24880; species=arabidopsis; confidence=high |
| 产物 | snurportin-1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828590]; symbol=AT4G24880; hit=AT4G24880; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G24880 (AT4G24880)snurportin-1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828590] identity=63.7; qcov=0.988; evalue=1.55e-159; confidence=high |
| Rice | Os01g0101300- identity=59.9; qcov=0.983; evalue=8.76e-141; confidence=high |
| GO | GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0061015 (snRNA import into nucleus) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF21974 (SPN1_m3Gcap_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020546 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805422.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057805423.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057805422.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057805424.1 |
| 5 | Mitochondrion | 线粒体 | 0.20000 | XP_057805424.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53172198 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | C40 |
Chr4:53172198 |
T |
TA |
1bp_insertion | CDS_variant | 1 | C40 |
Chr4:53172217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr4:53172235 |
AT |
A |
1bp_deletion | frameshift_variant | 11 | A9,B12,B19,B24,B95,B98,C2,C23,C39,C42,C72 |
Chr4:53172476 |
AG |
A |
1bp_deletion | frameshift_variant | 204 | A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A3,A5,A6,A8,B1,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B111,B112,B113,B114,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B27,B28,B29,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B47,B48,B49,B5,B50,B52,B54,B55,B56,B57,B58,B6,B62,B63,B64,B65,B66,B67,B68,B7,B71,B72,B73,B74,B75,B77,B79,B8,B82,B83,B84,B85,B86,B87,B88,B89,B9,B91,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C51,C52,C53,C55,C56,C57,C58,C60,C62,C63,C65,C66,C67,C68,C7,C70,C71,C72,C73,C75,C76,C78,C79,C80,C82,C83,C84,C85,C86,D1,D11,D2,D3,D5,D7,D8,D9 |
Chr4:53172480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr4:53172481 |
C |
T |
EMS_canonical_SNV | stop_gained | 205 | A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A3,A5,A6,A8,B1,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B111,B112,B113,B114,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B27,B28,B29,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B47,B48,B49,B5,B50,B52,B54,B55,B56,B57,B58,B6,B62,B63,B64,B65,B66,B67,B68,B7,B71,B72,B73,B74,B75,B77,B79,B8,B82,B83,B84,B85,B86,B87,B88,B89,B9,B91,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C51,C52,C53,C55,C56,C57,C58,C60,C62,C63,C65,C66,C67,C68,C7,C70,C71,C72,C73,C75,C76,C78,C79,C80,C82,C83,C84,C85,C86,D1,D11,D2,D3,D5,D7,D8,D9 |
Chr4:53172505 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B21,B32,B72,B91,C50,C55,C72 |
Chr4:53172565 |
C |
CA |
1bp_insertion | frameshift_variant | 131 | A1,A11,A13,A15,A16,A18,A19,A2,A20,A23,A24,A25,A4,A5,B1,B10,B100,B101,B104,B105,B108,B109,B11,B111,B112,B113,B114,B117,B118,B12,B125,B126,B127,B128,B13,B131,B132,B133,B136,B138,B140,B15,B16,B17,B19,B28,B29,B32,B34,B35,B37,B41,B42,B45,B49,B51,B52,B53,B54,B57,B59,B6,B60,B68,B69,B72,B75,B77,B78,B8,B83,B85,B89,B90,B91,B93,B97,C1,C11,C14,C15,C16,C18,C20,C21,C23,C25,C26,C28,C33,C34,C35,C36,C37,C39,C4,C41,C43,C44,C47,C48,C5,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C65,C66,C67,C68,C70,C71,C79,C8,C80,C81,C82,C83,C84,C85,C87,D2,D5,D7,D8 |
Chr4:53172573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,D2 |
Chr4:53172600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,C21 |
Chr4:53172613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805422.1PF21974
SPN1_m3Gcap_bd 145-322 aa
XP_057805423.1PF21974
SPN1_m3Gcap_bd 103-280 aa
XP_057805424.1PF21974
SPN1_m3Gcap_bd 145-322 aa
XP_057805425.1PF21974
SPN1_m3Gcap_bd 103-280 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805422.1 |
Pfam | PF21974 |
SPN1_m3Gcap_bd | Domain | 145 | 322 | 3.8e-58 | 197.2 | Snurportin1, m3G cap-binding domain |
XP_057805423.1 |
Pfam | PF21974 |
SPN1_m3Gcap_bd | Domain | 103 | 280 | 3.1e-58 | 197.4 | Snurportin1, m3G cap-binding domain |
XP_057805424.1 |
Pfam | PF21974 |
SPN1_m3Gcap_bd | Domain | 145 | 322 | 2.5e-58 | 197.7 | Snurportin1, m3G cap-binding domain |
XP_057805425.1 |
Pfam | PF21974 |
SPN1_m3Gcap_bd | Domain | 103 | 280 | 1.9e-58 | 198.1 | Snurportin1, m3G cap-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。