Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003689`

染色体: Chr04 坐标: 53288763-53293717 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003689`
名称	SmilChr04G003689
描述	dnaJ protein P58IPK homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53288763 - 53293717 / `-`

ID 对照

NCBI Gene ID	`LOC131020557`
GeneID	`131020557`
locus_tag	`-`
NCBI Name	`LOC131020557`
原始查询	`SmilChr04G003689`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dnaJ protein P58IPK homolog
产物	dnaJ protein P58IPK homolog
Arabidopsis	`AT5G03160` (P58IPK) DnaJ P58IPK-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831917] identity=69.7; qcov=0.865; evalue=1.11e-158; confidence=high
Rice	`Os02g0195300` (OsDjC16) - identity=65.4; qcov=0.771; evalue=1.59e-138; confidence=high
GO	GO:0005515 (protein binding); GO:0005788 (endoplasmic reticulum lumen)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00226 (DnaJ); PF00515 (TPR_1); PF07719 (TPR_2); PF13174 (TPR_6); PF13181 (TPR_8); PF13432 (TPR_16)
InterPro	-
eggNOG	-
NR	GeneID:131020557

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057805439.1`
2	Endoplasmic reticulum	内质网	0.80000	`XP_057805440.1`
3	Cytoplasm	细胞质	0.60000	`XP_057805439.1`
4	Chloroplast	叶绿体	0.20000	`XP_057805440.1`
5	Mitochondrion	线粒体	0.20000	`XP_057805438.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53289592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,C44
`Chr4:53289703`	`TA`	`T`	1bp_deletion	frameshift_variant	18	A10,A25,B17,B26,B4,B42,B49,B65,C18,C38,C44,C53,C62,C63,C75,C82,D11,D3
`Chr4:53290316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr4:53290584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53290588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,C31,C44
`Chr4:53290614`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A24
`Chr4:53290614`	`AC`	`A`	1bp_deletion	CDS_variant	1	A24
`Chr4:53290617`	`TTA`	`T`	2bp_deletion	frameshift_variant	1	A24
`Chr4:53290617`	`TTA`	`T`	2bp_deletion	CDS_variant	1	A24
`Chr4:53290836`	`G`	`GT`	1bp_insertion	frameshift_variant	6	B105,B14,B88,C12,C3,C40
`Chr4:53290849`	`GT`	`G`	1bp_deletion	frameshift_variant	63	A15,A20,A24,A25,B1,B108,B109,B115,B12,B121,B123,B136,B140,B17,B19,B21,B23,B29,B33,B4,B42,B47,B48,B53,B56,B61,B66,B70,B76,B78,B79,B80,B86,B94,C1,C10,C14,C25,C29,C31,C34,C35,C39,C42,C46,C47,C48,C56,C61,C65,C72,C79,C83,C87,C9,D1,D10,D11,D2,D4,D6,D7,D8
`Chr4:53290856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805438.1

474 aa

237

474

TPR_16

TPR_6

TPR_1

TPR_2

TPR_8

TPR_16

DnaJ

PF13432 TPR_16 63-115 aa PF13432 TPR_16 134-187 aa PF13174 TPR_6 198-222 aa PF00515 TPR_1 198-230 aa PF07719 TPR_2 198-230 aa PF13181 TPR_8 198-230 aa PF13432 TPR_16 201-233 aa PF00226 DnaJ 369-432 aa

XP_057805439.1

459 aa

230

459

TPR_16

TPR_6

TPR_1

TPR_2

TPR_8

TPR_16

DnaJ

PF13432 TPR_16 48-100 aa PF13432 TPR_16 119-172 aa PF13174 TPR_6 183-207 aa PF00515 TPR_1 183-215 aa PF07719 TPR_2 183-215 aa PF13181 TPR_8 183-215 aa PF13432 TPR_16 186-218 aa PF00226 DnaJ 354-417 aa

XP_057805440.1

401 aa

200

401

TPR_16

TPR_6

TPR_1

TPR_2

TPR_8

TPR_16

PF13432 TPR_16 63-115 aa PF13432 TPR_16 134-187 aa PF13174 TPR_6 198-222 aa PF00515 TPR_1 198-230 aa PF07719 TPR_2 198-230 aa PF13181 TPR_8 198-230 aa PF13432 TPR_16 201-233 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805438.1`	Pfam	`PF13432`	TPR_16	Repeat	63	115	1e-22	80.9	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF13432`	TPR_16	Repeat	134	187	1e-22	80.9	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF13174`	TPR_6	Repeat	198	222	2.6e-06	28.4	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF00515`	TPR_1	Repeat	198	230	9.4e-24	82.9	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF07719`	TPR_2	Repeat	198	230	6.2e-24	82.8	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF13181`	TPR_8	Repeat	198	230	2.6e-13	49.7	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF13432`	TPR_16	Repeat	201	233	1e-22	80.9	Tetratricopeptide repeat
`XP_057805438.1`	Pfam	`PF00226`	DnaJ	Domain	369	432	1.2e-26	93.3	DnaJ domain
`XP_057805439.1`	Pfam	`PF13432`	TPR_16	Repeat	48	100	5.9e-22	78.5	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF13432`	TPR_16	Repeat	119	172	5.9e-22	78.5	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF13174`	TPR_6	Repeat	183	207	9.8e-06	26.6	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF00515`	TPR_1	Repeat	183	215	4.9e-24	83.8	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF07719`	TPR_2	Repeat	183	215	1.9e-23	81.3	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF13181`	TPR_8	Repeat	183	215	5.8e-13	48.6	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF13432`	TPR_16	Repeat	186	218	5.9e-22	78.5	Tetratricopeptide repeat
`XP_057805439.1`	Pfam	`PF00226`	DnaJ	Domain	354	417	1.3e-26	93.2	DnaJ domain
`XP_057805440.1`	Pfam	`PF13432`	TPR_16	Repeat	63	115	2e-23	83.1	Tetratricopeptide repeat
`XP_057805440.1`	Pfam	`PF13432`	TPR_16	Repeat	134	187	2e-23	83.1	Tetratricopeptide repeat
`XP_057805440.1`	Pfam	`PF13174`	TPR_6	Repeat	198	222	1.6e-07	32.2	Tetratricopeptide repeat
`XP_057805440.1`	Pfam	`PF00515`	TPR_1	Repeat	198	230	7.1e-24	83.3	Tetratricopeptide repeat
`XP_057805440.1`	Pfam	`PF07719`	TPR_2	Repeat	198	230	1.1e-25	88.2	Tetratricopeptide repeat
`XP_057805440.1`	Pfam	`PF13181`	TPR_8	Repeat	198	230	5.4e-14	51.8	Tetratricopeptide repeat
`XP_057805440.1`	Pfam	`PF13432`	TPR_16	Repeat	201	233	2e-23	83.1	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949457.1
GGACTTGAGTTCCCTCCGTTAATTTACCGTATCATTAACGTGCTAAATACAATCCATAAACAAACTCGAGAATTTCTCTCTATGATGCATCAATTTCTAGTGAATTTCCTCTAGCACTGAGGTTTTTGAGATGGAGATGGCGGTAAATCTCTGCGGTTTTGATATGGTGGCATGGAGAGGATTCATATACGCACTGATTGTTCTGAATTTCGTGTTTTTGTGTCAGCTCATCCTTCTCCAACCGCTCATTGTAGATGGAA...

XM_057949456.1
AGTTCCCTCCGTTAATTTACCGTATCATTAACGTGCTAAATACAATCCATAAACAAACTCGAGAATTTCTCTCTATGATGCATCAATTTCTAGTGAATTTCCTCTAGCACTGAGGTTTTTGAGATGGAGATGGCGGTAAATCTCTGCGGTTTTGATATGGTGGCATGGAGAGGATTCATATACGCACTGATTGTTCTGAATTTCGTGTTTTTGTGTCAGCTCATCCTTCTCCAACCGCTCATTGTAGAGAGTATAAAAGT...

CDS

3 records

下载 CDS FASTA

LOC131020557
ATGGAGATGGCGGTAAATCTCTGCGGTTTTGATATGGTGGCATGGAGAGGATTCATATACGCACTGATTGTTCTGAATTTCGTGTTTTTGTGTCAGCTCATCCTTCTCCAACCGCTCATTGTAGAGAGTATAAAAGTGAAGAAATACAGTGAGGCCCTTGCTGAACTTAATGCTGCTATAGAAGCAGATCCAACATTCTCAGAAGCATATCGGCATCGGGCATCCATTCTATGTCAACTGTGCAGATATGGGGAATCTGA...

LOC131020557
ATGGAGATGGCGGTAAATCTCTGCGGTTTTGATATGGTGGCATGGAGAGGATTCATATACGCACTGATTGTTCTGAATTTCGTGTTTTTGTGTCAGCTCATCCTTCTCCAACCGCTCATTGTAGATGGAAAGACTGATGATGCTGCTGCTCTCTTCGAGAGAGTTTCAGAGAGTATAAAAGTGAAGAAATACAGTGAGGCCCTTGCTGAACTTAATGCTGCTATAGAAGCAGATCCAACATTCTCAGAAGCATATCGGCA...

Protein

3 records

下载 Protein FASTA

XP_057805438.1
MEMAVNLCGFDMVAWRGFIYALIVLNFVFLCQLILLQPLIVDGKTDDAAALFERVSESIKVKKYSEALAELNAAIEADPTFSEAYRHRASILCQLCRYGESEESYRKFLEMKPGNSAAEKELSKLHQAQSALDSAIEVFESGDYMKALEYIEKVVLVFSPECSKAKLLKVRLLISAKDYSSAISETGYILKEDEDNLEALLLRGNAYYYLGDHDIAIRHYQKGLRLDPEHGELKRSYFGLKKLLKKTKSADDNASNGKLR...

XP_057805439.1
MEMAVNLCGFDMVAWRGFIYALIVLNFVFLCQLILLQPLIVESIKVKKYSEALAELNAAIEADPTFSEAYRHRASILCQLCRYGESEESYRKFLEMKPGNSAAEKELSKLHQAQSALDSAIEVFESGDYMKALEYIEKVVLVFSPECSKAKLLKVRLLISAKDYSSAISETGYILKEDEDNLEALLLRGNAYYYLGDHDIAIRHYQKGLRLDPEHGELKRSYFGLKKLLKKTKSADDNASNGKLRLATEEYKAALALDPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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