Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003691`

染色体: Chr04 坐标: 53298624-53305847 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003691`
名称	SmilChr04G003691
描述	valine--tRNA ligase, mitochondrial 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53298624 - 53305847 / `-`

ID 对照

NCBI Gene ID	`LOC131020566`
GeneID	`131020566`
locus_tag	`-`
NCBI Name	`LOC131020566`
原始查询	`SmilChr04G003691`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	valine--tRNA ligase, mitochondrial 1
产物	valine--tRNA ligase%2C mitochondrial 1
Arabidopsis	`AT1G14610` (TWN2) valyl-tRNA synthetase / valine-tRNA ligase (VALRS) [Source:NCBI gene (formerly Entrezgene);Acc:838023] identity=73.6; qcov=0.947; evalue=0; confidence=high
Rice	`Os03g0694900` (OsValRS1) - identity=68.5; qcov=0.994; evalue=0; confidence=high
GO	GO:0002161 (aminoacyl-tRNA deacylase activity); GO:0004832 (valine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006438 (valyl-tRNA aminoacylation)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00133 (tRNA-synt_1); PF08264 (Anticodon_1); PF09334 (tRNA-synt_1g); PF10458 (Val_tRNA-synt_C); PF13603 (tRNA-synt_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131020566

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805457.1`
2	Cytosol	细胞质基质	1.00000	`XP_057805457.1`
3	Nucleus	细胞核	0.00000	`XP_057805457.1`
4	Chromosome	染色体	0.00000	`XP_057805457.1`
5	Centromere	着丝粒	0.00000	`XP_057805457.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53300641`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B17,C42
`Chr4:53300720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr4:53301113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B78,B96,C45
`Chr4:53301754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B59,B91
`Chr4:53301937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr4:53302413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53303259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C54,C64,C66
`Chr4:53303402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:53303907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,B85,D11
`Chr4:53303931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B78,B96,C45
`Chr4:53303933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B94,C54
`Chr4:53303940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B78,B96,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805457.1

1053 aa

526

1053

tRNA-synt_1

tRNA-synt_1g

tRNA-synt_1_2

Anticodon_1

Val_tRNA-synt_C

PF00133 tRNA-synt_1 99-721 aa PF09334 tRNA-synt_1g 125-188 aa PF13603 tRNA-synt_1_2 341-400 aa PF08264 Anticodon_1 767-910 aa PF10458 Val_tRNA-synt_C 982-1035 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805457.1`	Pfam	`PF00133`	tRNA-synt_1	Domain	99	721	2.3e-148	495.1	tRNA synthetases class I (I, L, M and V)
`XP_057805457.1`	Pfam	`PF09334`	tRNA-synt_1g	Family	125	188	8e-13	48.6	tRNA synthetases class I (M)
`XP_057805457.1`	Pfam	`PF13603`	tRNA-synt_1_2	Domain	341	400	1.5e-09	38.3	Leucyl-tRNA synthetase, editing domain
`XP_057805457.1`	Pfam	`PF08264`	Anticodon_1	Domain	767	910	1.3e-34	119.9	Anticodon-binding domain of tRNA ligase
`XP_057805457.1`	Pfam	`PF10458`	Val_tRNA-synt_C	Domain	982	1035	2e-06	28.7	Valyl tRNA synthetase tRNA binding arm

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949474.1
AAGAAAAAGAAATACCAGTCCCTCACTGTAGTTAAAACCGTTGTCGCCATCCCACACTCCCCAAAACCCTACGCTTCTTGGACTCCATTTGCCGCCTGCTTCATCGTCTCAAGCCACCTCGGACTTCAATTTCTCTATCACCATGGAGTCGCGAGAACTGACGGCGGAGGAACTCGAAAAGAAGAAGAAGAAAGAAGAGAAGGCTAGAGAGAAGGAGCTAAAGAAACTTAAAGCTGCACAAAAAGCAGCAGCAGCAAAGC...

CDS

1 records

下载 CDS FASTA

LOC131020566
ATGGAGTCGCGAGAACTGACGGCGGAGGAACTCGAAAAGAAGAAGAAGAAAGAAGAGAAGGCTAGAGAGAAGGAGCTAAAGAAACTTAAAGCTGCACAAAAAGCAGCAGCAGCAAAGCTTCAGGCACAACAACCTGCTGCTGCTTCAAAGTCAGAGAAGAAGAAGAATGCGAAAAGAGAAGCACAGGAGGAAAATCCCCAGGATTATGTTGACCCAGAGACACCTCTGGGTGAAAAGAAAAAGCTGGCTCGACAAATGGC...

Protein

1 records

下载 Protein FASTA

XP_057805457.1
MESRELTAEELEKKKKKEEKAREKELKKLKAAQKAAAAKLQAQQPAAASKSEKKKNAKREAQEENPQDYVDPETPLGEKKKLARQMAKTYNPSAVENSWYEWWEKSNFFEADPKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNTLWVPGMDHAGIATQVVVEKKLMREQKLTRHDVGRERFVDEVWKWKDEYGGTILKQLRRLGASLDWSRECFTMDEKRSRAVTEAFVRLHKEGLIYRDIRLVNW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器