Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003702

染色体: Chr04 坐标: 53365776-53367825 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003702
名称SmilChr04G003702
描述uncharacterized protein At1g28695-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向53365776 - 53367825 / +

ID 对照

NCBI Gene IDLOC131020576
GeneID131020576
locus_tag-
NCBI NameLOC131020576
原始查询SmilChr04G003702

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839771]; symbol=AT1G28710; hit=AT1G28710; species=arabidopsis; confidence=high
产物Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839771]; symbol=AT1G28710; hit=AT1G28710; species=arabidopsis; confidence=high
ArabidopsisAT1G28710 (AT1G28710)
Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839771]
identity=48.8; qcov=1; evalue=1.24e-106; confidence=high
RiceOs03g0731800 (OSJNBa0079G12.19)
-
identity=45.9; qcov=0.855; evalue=3.62e-77; confidence=high
GO-
KEGG-
PfamPF03407 (Nucleotid_trans)
InterPro-
eggNOG-
NRGeneID:131020576

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057805474.1
2 Golgi stack 高尔基堆 0.20000 XP_057805474.1
3 Nucleus 细胞核 0.00000 XP_057805474.1
4 Chromosome 染色体 0.00000 XP_057805474.1
5 Centromere 着丝粒 0.00000 XP_057805474.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:53366039 C T EMS_canonical_SNV CDS_variant 3 B56,B78,B96
Chr4:53366127 C T EMS_canonical_SNV CDS_variant 1 B117
Chr4:53366265 G A EMS_canonical_SNV CDS_variant 1 B104
Chr4:53366332 C T EMS_canonical_SNV CDS_variant 1 C79
Chr4:53366344 C T EMS_canonical_SNV CDS_variant 1 B91
Chr4:53366476 C T EMS_canonical_SNV CDS_variant 2 B126,B44
Chr4:53366517 G A EMS_canonical_SNV CDS_variant 2 C62,D2
Chr4:53366522 G A EMS_canonical_SNV CDS_variant 3 B118,B75,C84
Chr4:53366621 G A EMS_canonical_SNV CDS_variant 1 D11
Chr4:53366623 C T EMS_canonical_SNV CDS_variant 3 B110,B140,B65
Chr4:53367333 G A EMS_canonical_SNV CDS_variant 2 B46,B93
Chr4:53367602 G A EMS_canonical_SNV CDS_variant 2 B41,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057805474.1
344 aa
N
1
172
344
Nucleotid_trans
C
PF03407 Nucleotid_trans 107-312 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057805474.1 Pfam PF03407 Nucleotid_trans Family 107 312 2.5e-56 191.7 Nucleotide-diphospho-sugar transferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057949491.1
TACTCTTATTTATTTATGGTCAACTATTAGTACTAAATGAGGAATGAGATCCGAAATATAGAGAATTTGATTTAATTAAGAATTATAGCTCTAGGATTCTAGCCATGCCAAACCTTTGTCCTTTTGCATGACTTGTGACTCTAGATTAACCATTTCATTTCACCCTCCAAAATAAAAATTTCTAAATTAATTAGCTTCTTGCTCATGAAAAATTTCTGGAAATATGGAGTGCCACTCTAGTAACAAAAATCTAGCAATCC...

CDS

1 records

下载 CDS FASTA
LOC131020576
ATGGAGTGCCACTCTAGTAACAAAAATCTAGCAATCCTCTCTGTATTTCTAGCAGCAATCATACTTCTCAATTATCGTGAAGAGCTAACCACCAATGCCATCTTATTTTATACAGAAAAATCCCATTCCATCAATTCCAACTCGTCATTGGTGCATCGAGACGAGCTCCGAATAGTTTTGGAGAAGGCCTCAACGCCAGACAAGACGGTGATCATCGCTGTCATCAACGAGGCCTACGTCGAACCATACGAGAACGATTA...

Protein

1 records

下载 Protein FASTA
XP_057805474.1
MECHSSNKNLAILSVFLAAIILLNYREELTTNAILFYTEKSHSINSNSSLVHRDELRIVLEKASTPDKTVIIAVINEAYVEPYENDYPSMFDIFLEGFWIGEKTRPLLRHLLVVSMDKTAHERCRFRHLNCYFLAAEQGGGAGDFSGEKLYMSGEFIEMMWRRTAFLLDVLKRGYGFIFTDTDVIWVRDPFARLRKNGTFDLQISTDHFTGDPFSEDNPINTGFYAIRSSNKTTSLFEKWYDMRSNATGMKEQDVLQMLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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