当前解析结果
SmilChr04G003739| 统一新 Gene ID | SmilChr04G003739 |
|---|---|
| 名称 | SmilChr04G003739 |
| 描述 | 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53706958 - 53713237 / + |
| NCBI Gene ID | LOC131020617 |
|---|---|
| GeneID | 131020617 |
| locus_tag | - |
| NCBI Name | LOC131020617 |
| 原始查询 | SmilChr04G003739 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial |
| 产物 | 3-hydroxyisobutyryl-CoA hydrolase-like protein 1%2C mitochondrial |
| Arabidopsis | AT3G60510 (AT3G60510)ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825222] identity=54.5; qcov=0.897; evalue=4.73e-140; confidence=high |
| Rice | Os10g0552900- identity=54.8; qcov=0.897; evalue=1.82e-142; confidence=high |
| GO | GO:0003860 (3-hydroxyisobutyryl-CoA hydrolase activity); GO:0006574 (L-valine catabolic process) |
| KEGG | smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00378 (ECH_1); PF16113 (ECH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020617 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057805524.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057805524.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805524.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805524.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805524.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53707060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,D11 |
Chr4:53707084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr4:53707972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:53709678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:53709790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C37 |
Chr4:53709820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr4:53709894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr4:53710000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:53710009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B33,C38,C82,D2 |
Chr4:53710031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C43,D6,D8 |
Chr4:53710114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C8 |
Chr4:53710116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805524.1PF16113
ECH_2 44-379 aa
PF00378
ECH_1 48-212 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805524.1 |
Pfam | PF16113 |
ECH_2 | Domain | 44 | 379 | 2.4e-115 | 386.3 | Enoyl-CoA hydratase/isomerase |
XP_057805524.1 |
Pfam | PF00378 |
ECH_1 | Domain | 48 | 212 | 2.1e-25 | 90.2 | Enoyl-CoA hydratase/isomerase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。