当前解析结果
SmilChr04G003740| 统一新 Gene ID | SmilChr04G003740 |
|---|---|
| 名称 | SmilChr04G003740 |
| 描述 | uncharacterized SmilChr04G003740 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53712512 - 53715630 / - |
| NCBI Gene ID | LOC131020618 |
|---|---|
| GeneID | 131020618 |
| locus_tag | - |
| NCBI Name | LOC131020618 |
| 原始查询 | SmilChr04G003740 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | melanoma-associated antigen G1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:840381]; symbol=AT1G34770; hit=AT1G34770; species=arabidopsis; confidence=high |
| 产物 | melanoma-associated antigen G1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:840381]; symbol=AT1G34770; hit=AT1G34770; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G34770 (AT1G34770)melanoma-associated antigen G1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:840381] identity=55.7; qcov=0.983; evalue=3.05e-96; confidence=high |
| Rice | Os07g0151300- identity=56.5; qcov=1; evalue=1.66e-94; confidence=high |
| GO | GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | PF01454 (MAGE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020618 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805525.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057805525.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057805525.1 |
| 4 | Cytosol | 细胞质基质 | 0.60000 | XP_057805525.1 |
| 5 | Nuclear body | 核内小体 | 0.40000 | XP_057805525.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53713919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,C36,C71 |
Chr4:53713925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:53713960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,B90,B92 |
Chr4:53713964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr4:53714094 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,D10 |
Chr4:53714425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:53715212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:53715290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B37,B84,C19,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805525.1PF01454
MAGE 25-213 aa
XP_057805526.1PF01454
MAGE 25-213 aa
XP_057805527.1PF01454
MAGE 25-213 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805525.1 |
Pfam | PF01454 |
MAGE | Domain | 25 | 213 | 6.6e-45 | 154.1 | MAGE homology domain |
XP_057805526.1 |
Pfam | PF01454 |
MAGE | Domain | 25 | 213 | 6.6e-45 | 154.1 | MAGE homology domain |
XP_057805527.1 |
Pfam | PF01454 |
MAGE | Domain | 25 | 213 | 6.6e-45 | 154.1 | MAGE homology domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。