Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003741`

染色体: Chr04 坐标: 53716410-53718403 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003741`
名称	SmilChr04G003741
描述	protein transport protein Sec61 subunit beta-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53716410 - 53718403 / `-`

ID 对照

NCBI Gene ID	`LOC131020620`
GeneID	`131020620`
locus_tag	`-`
NCBI Name	`LOC131020620`
原始查询	`SmilChr04G003741`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein transport protein Sec61 subunit beta-like
产物	protein transport protein Sec61 subunit beta-like
Arabidopsis	`AT3G60540` (AT3G60540) Preprotein translocase Sec, Sec61-beta subunit protein [Source:NCBI gene (formerly Entrezgene);Acc:825225] identity=74.1; qcov=0.976; evalue=5.88e-32; confidence=medium
Rice	`Os12g0173366` - identity=71.4; qcov=0.506; evalue=1.52e-16; confidence=low
GO	GO:0005784 (Sec61 translocon complex); GO:0005789 (endoplasmic reticulum membrane); GO:0006886 (intracellular protein transport)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03911 (Sec61_beta)
InterPro	-
eggNOG	-
NR	GeneID:131020620

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057805528.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057805528.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057805528.1`
4	Nucleus	细胞核	0.00000	`XP_057805528.1`
5	Chromosome	染色体	0.00000	`XP_057805528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53716673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B131,B66
`Chr4:53716683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B75,D6
`Chr4:53716727`	`CGG`	`C`	2bp_deletion	frameshift_variant	12	A6,B111,B117,B38,B53,B62,B79,B96,C14,C40,C42,C79
`Chr4:53716731`	`A`	`ATG`	2bp_insertion	frameshift_variant	12	A6,B111,B117,B38,B53,B62,B79,B96,C14,C40,C42,C79
`Chr4:53716753`	`CT`	`C`	1bp_deletion	frameshift_variant	4	A6,B38,B53,C14
`Chr4:53716753`	`CT`	`C`	1bp_deletion	CDS_variant	4	A6,B38,B53,C14
`Chr4:53716787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B38,B53,C14
`Chr4:53716831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B75,C11,D6
`Chr4:53716858`	`ATT`	`A`	2bp_deletion	frameshift_variant	2	B27,B46
`Chr4:53716858`	`ATT`	`A`	2bp_deletion	CDS_variant	2	B27,B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805528.1

83 aa

Sec61_beta

PF03911 Sec61_beta 35-75 aa

XP_057805529.1

83 aa

Sec61_beta

PF03911 Sec61_beta 35-75 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805528.1`	Pfam	`PF03911`	Sec61_beta	Family	35	75	6.9e-19	68.3	Sec61beta family
`XP_057805529.1`	Pfam	`PF03911`	Sec61_beta	Family	35	75	6.9e-19	68.3	Sec61beta family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949546.1
TAACCATTATAATTAGTTTCCTAATATTTTTCGAAAACAATGTAAGTTTCCTAGTAGGATTTAGAATCAAGACTCCCTTATAAATACTACTTGAATCTTGAAAACTTTTTCATCTTGTTATCAAATAACCAAAATTTAGCATCAAAATCGCCAGATTCGAATAATTTCCGACAATAAGGGCCCTATATATAGCGGTTGAATATTCACATGCACTCCTACAATTTCCGATCTGAAATTCGCAAACCCTAGAGAGAAAACCC...

XM_057949545.1
CCATTATAATTAGTTTCCTAATATTTTTCGAAAACAATGTAAGTTTCCTAGTAGGATTTAGAATCAAGACTCCCTTATAAATACTACTTGAATCTTGAAAACTTTTTCATCTTGTTATCAAATAACCAAAATTTAGCATCAAAATCGCCAGATTCGAATAATTTCCGACAATAAGGGCCCTATATATAGCGGTTGAATATTCACATGCACTCCTACAATTTCCGATCTGAAATTCGCAAACCCTAGAGAGAAAACCCCCA...

CDS

2 records

下载 CDS FASTA

LOC131020620
ATGGCAGGTGGAGCTGCGCCTGAACGAGGAACTGCTGCAGCTGCTGCGGCTAATCTTCGTAGGAGAAGAACAGGTGGAGGTGGAGGTGGAGCTGCTGGTGGAACTAGTGGAACCATGCTCCAATTCTATACCGATGATGCCCCAGGGCTTAAAATTTCTCCCAACGTCGTTCTTGTGATGAGCATCGGTTTCATAGCTTTTGTTGCTATACTTCACGTCGTGGGCAAGCTCTACTTTGTCCGCAGAGATTAG

Protein

2 records

下载 Protein FASTA

XP_057805528.1
MAGGAAPERGTAAAAAANLRRRRTGGGGGGAAGGTSGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVVGKLYFVRRD

XP_057805529.1
MAGGAAPERGTAAAAAANLRRRRTGGGGGGAAGGTSGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVVGKLYFVRRD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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