Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003743`

染色体: Chr04 坐标: 53726226-53731067 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003743`
名称	SmilChr04G003743
描述	uncharacterized SmilChr04G003743
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53726226 - 53731067 / `-`

ID 对照

NCBI Gene ID	`LOC131020622`
GeneID	`131020622`
locus_tag	`-`
NCBI Name	`LOC131020622`
原始查询	`SmilChr04G003743`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0610000; species=rice; confidence=low
产物	hit=Os04g0610000; species=rice; confidence=low
Arabidopsis	`AT1G40087` (AT1G40087) Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721] identity=24.7; qcov=0.47; evalue=1.6e-14; confidence=weak
Rice	`Os04g0610000` - identity=32.6; qcov=0.441; evalue=1.77e-30; confidence=low
GO	-
KEGG	-
Pfam	PF03004 (Transposase_24)
InterPro	-
eggNOG	-
NR	GeneID:131020622

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805533.1`
2	Chromosome	染色体	0.40000	`XP_057805533.1`
3	Centromere	着丝粒	0.00000	`XP_057805533.1`
4	Chromatin	染色质	0.00000	`XP_057805533.1`
5	Telomere	端粒	0.00000	`XP_057805533.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53727483`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B61
`Chr4:53727483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr4:53727808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr4:53727863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C21
`Chr4:53728037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:53728322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C55
`Chr4:53731049`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B120,B73,C30,C36,C64
`Chr4:53731049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B73,C30,C36,C64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805533.1

629 aa

314

629

Transposase_24

PF03004 Transposase_24 339-469 aa

XP_057805534.1

628 aa

314

628

Transposase_24

PF03004 Transposase_24 338-468 aa

XP_057805535.1

619 aa

310

619

Transposase_24

PF03004 Transposase_24 329-459 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805533.1`	Pfam	`PF03004`	Transposase_24	Family	339	469	6.3e-30	104.8	Plant transposase (Ptta/En/Spm family)
`XP_057805534.1`	Pfam	`PF03004`	Transposase_24	Family	338	468	6.3e-30	104.9	Plant transposase (Ptta/En/Spm family)
`XP_057805535.1`	Pfam	`PF03004`	Transposase_24	Family	329	459	6.1e-30	104.9	Plant transposase (Ptta/En/Spm family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949551.1
ATTATTTTTTAATTCATGCAGTTTCGAGCTTCCTTCAATCCAAACTTCATTATTATGGCGCCAAACACGAAATCTCATGGAAATCGTGGAAGACATTCAAGGCGTGCACAAAATGACAGCCCTGATTCCGTTGATGATTTAACTGATACCCAATTAGGCCTAGATCATATTGAAAGACCCGCTAATATGCAACTAAGAAAACCTCGTACTAATAGAGGTTGGCATCAAAGGAGTGAGCAAAACAATGACATCCTTGATTC...

XM_057949550.1
ATTATTTTTTAATTCATGCAGTTTCGAGCTTCCTTCAATCCAAACTTCATTATTATGGCGCCAAACACGAAATCTCATGGAAATCGTGGAAGACATTCAAGGCGTGCACAAAATGACAGCCCTGATTCCGTTGATGATTTAACTGATACCCAATTAGGCCTAGATCATATTGAAAGACCCGCTAATATGCAACTAAGAAAACCTCGTACTAATAGAGGTTGGCATCAAAGGAGTGAGCAAAACAATGACATCCTTGATTC...

CDS

3 records

下载 CDS FASTA

LOC131020622
ATGCAGTTTCGAGCTTCCTTCAATCCAAACTTCATTATTATGGCGCCAAACACGAAATCTCATGGAAATCGTGGAAGACATTCAAGGCGTGCACAAAATGACAGCCCTGATTCCGTTGATGATTTAACTGATACCCAATTAGGCCTAGATCATATTGAAAGACCCGCTAATATGCAACTAAGAAAACCTCGTACTAATAGAGGTTGGCATCAAAGGAGTGAGCAAAACAATGACATCCTTGATTCATTGAATGACTCATC...

Protein

3 records

下载 Protein FASTA

XP_057805533.1
MQFRASFNPNFIIMAPNTKSHGNRGRHSRRAQNDSPDSVDDLTDTQLGLDHIERPANMQLRKPRTNRGWHQRSEQNNDILDSLNDSSEREIGLDHIERSADIQVRKPRTNRGWHQRTGQENYIIGSLNDSSEREIGLDHIERSADIQVRKPRTNRGRRQRTGQNNDIIGSLNDSSEREIVQNTSENVQEVGCRTSKNNSENVTTELVDGGNKKKRARGPTCMPKVWGLNKNFNVSFNELGQPNDRKQTSTLAHFLGTIAR...

XP_057805534.1
MQFRASFNPNFIIMAPNTKSHGNRGRHSRRAQNDSPDSVDDLTDTQLGLDHIERPANMQLRKPRTNRGWHQRSEQNNDILDSLNDSSEREIGLDHIERSADIQVRKPRTNRGWHQRTGQENYIIGSLNDSSEREIGLDHIERSADIQVRKPRTNRGRRQRTGQNNDIIGSLNDSSEREIVQNTSENVQEVGCRTSKNNSENVTTELDGGNKKKRARGPTCMPKVWGLNKNFNVSFNELGQPNDRKQTSTLAHFLGTIARN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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