当前解析结果
SmilChr04G003746| 统一新 Gene ID | SmilChr04G003746 |
|---|---|
| 名称 | SmilChr04G003746 |
| 描述 | uncharacterized SmilChr04G003746 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53751613 - 53755949 / + |
| NCBI Gene ID | LOC131020627 |
|---|---|
| GeneID | 131020627 |
| locus_tag | - |
| NCBI Name | LOC131020627 |
| 原始查询 | SmilChr04G003746 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os10g0324600; species=rice; confidence=low |
| 产物 | hit=Os10g0324600; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os10g0324600- identity=25.7; qcov=0.348; evalue=8.47e-08; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF12171 (zf-C2H2_jaz); PF12874 (zf-met) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020627 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805543.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057805543.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057805543.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057805543.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057805543.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53751857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B55,C46,D3 |
Chr4:53752014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C63 |
Chr4:53752022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,C36 |
Chr4:53754576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B1 |
Chr4:53754643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B73,C37 |
Chr4:53754768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B1 |
Chr4:53754814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:53754935 |
T |
TG |
1bp_insertion | frameshift_variant | 36 | A1,A16,A22,A23,A4,A6,B102,B105,B115,B121,B13,B139,B25,B28,B31,B33,B41,B43,B44,B58,B59,B70,B88,B94,B98,C22,C24,C34,C39,C46,C49,C53,C60,C61,C82,C83 |
Chr4:53754963 |
C |
CA |
1bp_insertion | frameshift_variant | 14 | A11,A24,A6,B127,B13,B35,B49,B72,B75,C54,C61,C7,C80,C81 |
Chr4:53754988 |
G |
GAA |
2bp_insertion | frameshift_variant | 4 | B61,C38,C42,C9 |
Chr4:53754988 |
G |
GAA |
2bp_insertion | CDS_variant | 4 | B61,C38,C42,C9 |
Chr4:53754998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,B62,C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805543.1PF12874
zf-met 285-308 aa
PF12171
zf-C2H2_jaz 286-309 aa
PF12874
zf-met 440-463 aa
PF12171
zf-C2H2_jaz 440-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805543.1 |
Pfam | PF12874 |
zf-met | Domain | 285 | 308 | 8.4e-15 | 55.2 | Zinc-finger of C2H2 type |
XP_057805543.1 |
Pfam | PF12171 |
zf-C2H2_jaz | Family | 286 | 309 | 9e-13 | 48.8 | Zinc-finger double-stranded RNA-binding |
XP_057805543.1 |
Pfam | PF12874 |
zf-met | Domain | 440 | 463 | 8.4e-15 | 55.2 | Zinc-finger of C2H2 type |
XP_057805543.1 |
Pfam | PF12171 |
zf-C2H2_jaz | Family | 440 | 464 | 9e-13 | 48.8 | Zinc-finger double-stranded RNA-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。