当前解析结果
SmilChr04G003758| 统一新 Gene ID | SmilChr04G003758 |
|---|---|
| 名称 | SmilChr04G003758 |
| 描述 | tubulin-folding cofactor D |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53839632 - 53850917 / - |
| NCBI Gene ID | LOC131020626 |
|---|---|
| GeneID | 131020626 |
| locus_tag | - |
| NCBI Name | LOC131020626 |
| 原始查询 | SmilChr04G003758 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tubulin-folding cofactor D |
| 产物 | tubulin-folding cofactor D |
| Arabidopsis | AT3G60740 (TTN1)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825245] identity=65.7; qcov=0.988; evalue=0; confidence=high |
| Rice | Os10g0508500- identity=57.3; qcov=0.476; evalue=0; confidence=medium |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0005096 (GTPase activator activity); GO:0007021 (tubulin complex assembly); GO:0007023 (post-chaperonin tubulin folding pathway); GO:0048487 (beta-tubulin binding) |
| KEGG | - |
| Pfam | PF12612 (TFCD_C); PF23579 (ARM_TBCD); PF25767 (ARM_TBCD_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805540.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057805540.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805540.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805540.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805540.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53840130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr4:53840137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B26,B3,B45,C74 |
Chr4:53840139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C27,D10 |
Chr4:53840149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr4:53840203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,B54,B69 |
Chr4:53840226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,B54,B69 |
Chr4:53840298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr4:53840312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C27 |
Chr4:53840338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:53842115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr4:53842579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:53842637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805540.1PF23579
ARM_TBCD 64-255 aa
PF25767
ARM_TBCD_2nd 312-559 aa
PF12612
TFCD_C 943-1129 aa
XP_057805541.1PF23579
ARM_TBCD 64-255 aa
PF25767
ARM_TBCD_2nd 312-559 aa
PF12612
TFCD_C 943-1129 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805540.1 |
Pfam | PF23579 |
ARM_TBCD | Repeat | 64 | 255 | 5.5e-59 | 199.5 | Tubulin-specific chaperone D-like, ARM repeat |
XP_057805540.1 |
Pfam | PF25767 |
ARM_TBCD_2nd | Repeat | 312 | 559 | 4.2e-107 | 357.8 | Tubulin-specific chaperone D-like, ARM repeats |
XP_057805540.1 |
Pfam | PF12612 |
TFCD_C | Family | 943 | 1129 | 1.7e-55 | 188.5 | Tubulin folding cofactor D C terminal |
XP_057805541.1 |
Pfam | PF23579 |
ARM_TBCD | Repeat | 64 | 255 | 5.5e-59 | 199.5 | Tubulin-specific chaperone D-like, ARM repeat |
XP_057805541.1 |
Pfam | PF25767 |
ARM_TBCD_2nd | Repeat | 312 | 559 | 4.2e-107 | 357.8 | Tubulin-specific chaperone D-like, ARM repeats |
XP_057805541.1 |
Pfam | PF12612 |
TFCD_C | Family | 943 | 1129 | 1.7e-55 | 188.5 | Tubulin folding cofactor D C terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。