Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003760`

染色体: Chr04 坐标: 53854661-53857001 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003760`
名称	SmilChr04G003760
描述	UDP-glucuronate 4-epimerase 3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53854661 - 53857001 / `-`

ID 对照

NCBI Gene ID	`LOC131020629`
GeneID	`131020629`
locus_tag	`-`
NCBI Name	`LOC131020629`
原始查询	`SmilChr04G003760`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glucuronate 4-epimerase 3-like
产物	UDP-glucuronate 4-epimerase 3-like
Arabidopsis	`AT4G00110` (GAE3) UDP-D-glucuronate 4-epimerase 3 [Source:NCBI gene (formerly Entrezgene);Acc:828145] identity=82.9; qcov=1; evalue=0; confidence=high
Rice	`Os02g0791500` (OsUGlcAE3) - identity=67.1; qcov=0.981; evalue=0; confidence=high
GO	-
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131020629

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057805545.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057805545.1`
3	Nucleus	细胞核	0.00000	`XP_057805545.1`
4	Chromosome	染色体	0.00000	`XP_057805545.1`
5	Centromere	着丝粒	0.00000	`XP_057805545.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53855211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53855232`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr4:53855312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr4:53855332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C27
`Chr4:53855430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B124,B66,C45,C70
`Chr4:53855442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr4:53855478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B30,D6
`Chr4:53855520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,C28
`Chr4:53855532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C85
`Chr4:53855589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr4:53855592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B52,B54,B69
`Chr4:53855733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C10,C2,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805545.1

431 aa

216

431

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 92-258 aa PF02719 Polysacc_synt_2 94-299 aa PF01370 Epimerase 94-331 aa PF01073 3Beta_HSD 95-374 aa PF16363 GDP_Man_Dehyd 95-414 aa PF07993 NAD_binding_4 167-274 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805545.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	92	258	1e-12	48.5	RmlD substrate binding domain
`XP_057805545.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	94	299	1.8e-08	34.7	Polysaccharide biosynthesis protein
`XP_057805545.1`	Pfam	`PF01370`	Epimerase	Family	94	331	5.8e-51	173.9	NAD dependent epimerase/dehydratase family
`XP_057805545.1`	Pfam	`PF01073`	3Beta_HSD	Family	95	374	1.1e-11	45.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057805545.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	95	414	1e-43	150.8	GDP-mannose 4,6 dehydratase
`XP_057805545.1`	Pfam	`PF07993`	NAD_binding_4	Family	167	274	2.6e-06	27.5	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949562.1
AAACAACAAAACCCTCTCTCACTCGTGTTTGCAATTTAATCAAATGAGAAGTTTTTATTTTGCGCATTTGAAGGAGAAAGCATAGTCGAAAATGCATTAACTTTACTAATCATGTTTAATTAATTAAGACTAACAAAACGCATTAATTATAGCTGCATTTGGACTCTCTTAATAAAAATGATTAGTCCACTCTAACTCCTCAATTTTAGTCCATTTTATTTTAAACTTCTTCAAACCCCATCCTTCTCCCTCCTCCAAAT...

CDS

1 records

下载 CDS FASTA

LOC131020629
ATGAAGCACATTGACAGCCCATCAACCCCTGGGAAATTCAAGATGGAGAAATCTCCGTACAATCGGCTGCGGCTGCAATCTTCAATAGCTAAGCTCACTTTTTGGTCTTTTGTATTTCTTGGAATGATATTCGTATTCTTTTATAGATCACCGTCTTCGTCAAACCCCGCCCCCTCAGATCTTTCTAGAAGGTCCCTTAGAACTAGCTCATATTCAGGCCCTAATTTCGAAAAAAGGGTTAGACAATCTGCTAAACCTAG...

Protein

1 records

下载 Protein FASTA

XP_057805545.1
MKHIDSPSTPGKFKMEKSPYNRLRLQSSIAKLTFWSFVFLGMIFVFFYRSPSSSNPAPSDLSRRSLRTSSYSGPNFEKRVRQSAKPRSRHGMSVLVTGAAGFVGTHVSASLKRRGDGVLGLDNFNSYYDPSLKRARQALLERSGVYIVEGDINDGALLAKLFDIVPFTHVMHLAAQAGVRFAMENPSSYVHSNIAGLVSVLEFCKNANPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器