当前解析结果
SmilChr04G003766| 统一新 Gene ID | SmilChr04G003766 |
|---|---|
| 名称 | SmilChr04G003766 |
| 描述 | pectinesterase inhibitor 11-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53895436 - 53896342 / + |
| NCBI Gene ID | LOC131020641 |
|---|---|
| GeneID | 131020641 |
| locus_tag | - |
| NCBI Name | LOC131020641 |
| 原始查询 | SmilChr04G003766 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectinesterase inhibitor 11-like |
| 产物 | pectinesterase inhibitor 11-like |
| Arabidopsis | AT3G47380 (AT3G47380)Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823892] identity=38.8; qcov=0.947; evalue=2.9e-42; confidence=medium |
| Rice | Os06g0711800- identity=36.5; qcov=0.807; evalue=7.17e-29; confidence=medium |
| GO | GO:0004857 (enzyme inhibitor activity); GO:0043086 (negative regulation of catalytic activity) |
| KEGG | - |
| Pfam | PF04043 (PMEI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020641 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057805569.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057805569.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805569.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805569.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805569.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53895523 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | B109 |
Chr4:53895523 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | B109 |
Chr4:53895553 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,D8 |
Chr4:53895559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr4:53895563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C64,C66,C86 |
Chr4:53895590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B52,B54,B69 |
Chr4:53895597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr4:53895620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B58,C2,C4 |
Chr4:53895659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr4:53895682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:53895919 |
CAG |
C |
2bp_deletion | frameshift_variant | 39 | A16,A22,A23,A25,B105,B109,B11,B119,B121,B126,B130,B134,B15,B22,B30,B34,B45,B50,B53,B63,B80,B82,B86,C12,C24,C29,C39,C4,C44,C49,C51,C52,C63,C75,C76,C77,C81,C85,C9 |
Chr4:53896042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805569.1PF04043
PMEI 33-192 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805569.1 |
Pfam | PF04043 |
PMEI | Domain | 33 | 192 | 3.8e-32 | 112.3 | Plant invertase/pectin methylesterase inhibitor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。