当前解析结果
SmilChr04G003768| 统一新 Gene ID | SmilChr04G003768 |
|---|---|
| 名称 | SmilChr04G003768 |
| 描述 | LRR receptor kinase SERK2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53904179 - 53907591 / + |
| NCBI Gene ID | LOC131020654 |
|---|---|
| GeneID | 131020654 |
| locus_tag | - |
| NCBI Name | LOC131020654 |
| 原始查询 | SmilChr04G003768 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor kinase SERK2-like |
| 产物 | LRR receptor kinase SERK2-like |
| Arabidopsis | AT2G45340 (AT2G45340)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819142] identity=61.2; qcov=0.982; evalue=0; confidence=high |
| Rice | Os06g0134700- identity=57; qcov=0.963; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020654 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057805602.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057805602.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805602.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805602.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805602.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53904512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:53904524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B79,C74 |
Chr4:53904534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr4:53904760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B124,B60,D4 |
Chr4:53904766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B124,B60,D4 |
Chr4:53904775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B124,B60,D4 |
Chr4:53905937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:53905999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B58,C4 |
Chr4:53906045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:53906092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr4:53906195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:53906243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B36,B57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805602.1PF08263
LRRNT_2 29-65 aa
PF23598
LRR_14 82-196 aa
PF00560
LRR_1 141-163 aa
PF00560
LRR_1 214-235 aa
PF00069
Pkinase 404-664 aa
PF07714
PK_Tyr_Ser-Thr 407-666 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805602.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 65 | 2.6e-07 | 31.5 | Leucine rich repeat N-terminal domain |
XP_057805602.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 82 | 196 | 1.4e-11 | 44.5 | Leucine-rich repeat region |
XP_057805602.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 141 | 163 | 3e-14 | 50.8 | Leucine Rich Repeat |
XP_057805602.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 214 | 235 | 3e-14 | 50.8 | Leucine Rich Repeat |
XP_057805602.1 |
Pfam | PF00069 |
Pkinase | Domain | 404 | 664 | 9.9e-28 | 98.0 | Protein kinase domain |
XP_057805602.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 407 | 666 | 5.4e-38 | 131.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。