当前解析结果
SmilChr04G003770| 统一新 Gene ID | SmilChr04G003770 |
|---|---|
| 名称 | SmilChr04G003770 |
| 描述 | vestitone reductase-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53912308 - 53914772 / - |
| NCBI Gene ID | LOC131020693 |
|---|---|
| GeneID | 131020693 |
| locus_tag | - |
| NCBI Name | LOC131020693 |
| 原始查询 | SmilChr04G003770 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vestitone reductase-like |
| 产物 | vestitone reductase-like |
| Arabidopsis | AT2G45400 (BEN1)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819146] identity=47.1; qcov=1; evalue=2.18e-97; confidence=high |
| Rice | Os08g0515900- identity=38.6; qcov=0.849; evalue=1.9e-66; confidence=medium |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020693 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805664.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057805664.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805664.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805664.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53912585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr4:53912608 |
C |
CAA |
2bp_insertion | frameshift_variant | 8 | A2,B26,B3,B35,B45,B67,B75,C14 |
Chr4:53912876 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B107,C49 |
Chr4:53912876 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B107,C49 |
Chr4:53912893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B93 |
Chr4:53913592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr4:53913712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C40,C53,C8,C83 |
Chr4:53913862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B7 |
Chr4:53913985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B7 |
Chr4:53913994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B48,B82,C74 |
Chr4:53914024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:53914599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B51,B56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805664.1PF05368
NmrA 7-147 aa
PF08659
KR 8-136 aa
PF01370
Epimerase 10-258 aa
PF16363
GDP_Man_Dehyd 12-133 aa
PF07993
NAD_binding_4 12-201 aa
PF01073
3Beta_HSD 12-245 aa
PF13460
NAD_binding_10 14-137 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805664.1 |
Pfam | PF05368 |
NmrA | Family | 7 | 147 | 7.5e-08 | 33.0 | NmrA-like family |
XP_057805664.1 |
Pfam | PF08659 |
KR | Family | 8 | 136 | 5.2e-05 | 24.0 | KR domain |
XP_057805664.1 |
Pfam | PF01370 |
Epimerase | Family | 10 | 258 | 1.8e-22 | 80.6 | NAD dependent epimerase/dehydratase family |
XP_057805664.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 12 | 133 | 6.1e-12 | 46.4 | GDP-mannose 4,6 dehydratase |
XP_057805664.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 12 | 201 | 1.4e-11 | 44.8 | Male sterility protein |
XP_057805664.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 12 | 245 | 2.8e-17 | 63.4 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057805664.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 14 | 137 | 8.8e-09 | 36.2 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。