当前解析结果
SmilChr04G003785| 统一新 Gene ID | SmilChr04G003785 |
|---|---|
| 名称 | SmilChr04G003785 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 54006370 - 54008769 / - |
| NCBI Gene ID | LOC131023625 |
|---|---|
| GeneID | 131023625 |
| locus_tag | - |
| NCBI Name | LOC131023625 |
| 原始查询 | SmilChr04G003785 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=34.1; qcov=0.763; evalue=2.24e-113; confidence=low |
| Rice | Os02g0542200- identity=37.3; qcov=0.831; evalue=1.13e-157; confidence=medium |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023625 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809151.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057809151.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057809151.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057809151.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057809151.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:54006439 |
T |
TA |
1bp_insertion | frameshift_variant | 4 | B130,B62,C62,C74 |
Chr4:54006439 |
T |
TA |
1bp_insertion | CDS_variant | 4 | B130,B62,C62,C74 |
Chr4:54006545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr4:54006576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr4:54006580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B86,C79,C87,D3 |
Chr4:54006601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr4:54006611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr4:54007784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:54007815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B55 |
Chr4:54007820 |
G |
GT |
1bp_insertion | frameshift_variant | 17 | A11,A9,B117,B124,B3,B35,B39,B4,B63,B64,B79,B91,C28,C4,C63,C81,C86 |
Chr4:54007821 |
C |
CT |
1bp_insertion | frameshift_variant | 20 | A13,A20,A21,B118,B126,B137,B19,B20,B26,B61,B69,B96,C12,C35,C47,C5,C57,C64,C78,C82 |
Chr4:54007823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B134,B60,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809151.1PF03101
FAR1 26-111 aa
PF21056
ZSWIM1-3_RNaseH-like 204-316 aa
PF10551
MULE 234-328 aa
PF00872
Transposase_mut 236-417 aa
PF04434
SWIM 527-545 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809151.1 |
Pfam | PF03101 |
FAR1 | Domain | 26 | 111 | 2.1e-19 | 70.8 | FAR1 DNA-binding domain |
XP_057809151.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 204 | 316 | 1.7e-10 | 41.6 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057809151.1 |
Pfam | PF10551 |
MULE | Domain | 234 | 328 | 3.2e-26 | 92.3 | MULE transposase domain |
XP_057809151.1 |
Pfam | PF00872 |
Transposase_mut | Family | 236 | 417 | 4e-05 | 23.4 | Transposase, Mutator family |
XP_057809151.1 |
Pfam | PF04434 |
SWIM | Domain | 527 | 545 | 0.00076 | 19.7 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。