Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003787`

染色体: Chr04 坐标: 54021630-54026160 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003787`
名称	SmilChr04G003787
描述	65-kDa microtubule-associated protein 3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54021630 - 54026160 / `-`

ID 对照

NCBI Gene ID	`LOC131020653`
GeneID	`131020653`
locus_tag	`-`
NCBI Name	`LOC131020653`
原始查询	`SmilChr04G003787`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	65-kDa microtubule-associated protein 3
产物	65-kDa microtubule-associated protein 3
Arabidopsis	`AT5G51600` (PLE) Microtubule associated protein (MAP65/ASE1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835234] identity=50.1; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0685900` (P0478H03.31-1) - identity=48.7; qcov=1.03; evalue=0; confidence=high
GO	GO:0000226 (microtubule cytoskeleton organization); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding)
KEGG	-
Pfam	PF03999 (MAP65_ASE1)
InterPro	-
eggNOG	-
NR	GeneID:131020653

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057805599.1`
2	Spindle	Spindle	1.00000	`XP_057805599.1`
3	Nucleus	细胞核	0.80000	`XP_057805599.1`
4	Chromosome	染色体	0.80000	`XP_057805599.1`
5	Spindle pole	Spindle pole	0.80000	`XP_057805599.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54021912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C73,D10
`Chr4:54021928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr4:54021995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:54022106`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B33
`Chr4:54022106`	`TG`	`T`	1bp_deletion	CDS_variant	1	B33
`Chr4:54022249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,C25
`Chr4:54022855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:54022889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:54023551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B22,B38,B82
`Chr4:54023669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B51,B52,C10
`Chr4:54023846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B25,D10
`Chr4:54023903`	`G`	`A`	EMS_canonical_SNV	stop_gained	97	A11,A14,A15,A16,A20,A23,A24,A25,A3,A5,A6,B1,B107,B108,B111,B113,B115,B12,B120,B124,B126,B129,B133,B134,B137,B139,B140,B17,B18,B20,B21,B25,B26,B3,B31,B35,B36,B37,B38,B39,B41,B42,B43,B45,B46,B47,B48,B51,B52,B54,B56,B59,B61,B65,B7,B74,B78,B79,B83,B86,B88,B91,B94,B95,B96,B97,C1,C10,C18,C2,C20,C27,C28,C29,C31,C37,C43,C44,C48,C49,C50,C54,C56,C57,C59,C72,C73,C75,C78,C84,C86,C9,D2,D4,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805599.1

694 aa

347

694

MAP65_ASE1

PF03999 MAP65_ASE1 8-494 aa

XP_057805600.1

694 aa

347

694

MAP65_ASE1

PF03999 MAP65_ASE1 8-494 aa

XP_057805601.1

692 aa

346

692

MAP65_ASE1

PF03999 MAP65_ASE1 8-492 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805599.1`	Pfam	`PF03999`	MAP65_ASE1	Family	8	494	1.5e-98	331.4	Microtubule associated protein (MAP65/ASE1 family)
`XP_057805600.1`	Pfam	`PF03999`	MAP65_ASE1	Family	8	494	1.5e-98	331.4	Microtubule associated protein (MAP65/ASE1 family)
`XP_057805601.1`	Pfam	`PF03999`	MAP65_ASE1	Family	8	492	1.3e-99	334.8	Microtubule associated protein (MAP65/ASE1 family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949618.1
ATTTTCGTGACCATTTCCCTCTCAATATATTTGATTCAAAAACAAGCGTTACCTATTTCTCTGCGTTTCTATACTTCCCTCTTTCGCAATCTGCATACGAATAATTCGTTTTCAGAGAAAATTTCTGCTCAATCTGCCACAAGTTCGACCCGCAATTGCAACTGTGATCGACCGGTTTCGAGTTCAGAGTAGGCTTGTCGCGTACGACCAGTGTATTGATCAAGGTTTGCCAATGGAATCAACTTGTGGTTCTCTTTTGT...

XM_057949617.1
TTTTCGTGACCATTTCCCTCTCAATATATTTGATTCAAAAACAAGCGTTACCTATTTCTCTGCGTTTCTATACTTCCCTCTTTCGCAATCTGCATACGAATAATTCGTTTTCAGAGAAAATTTCTGCTCAATCTGCCACAAGTTCGACCCGCAATTGCAACTGTGATCGACCGGTTTCGAGTTCAGGCTTGTCGCGTACGACCAGTGTATTGATCAAGGTTTGCCAATGGAATCAACTTGTGGTTCTCTTTTGTTAGAGC...

CDS

3 records

下载 CDS FASTA

LOC131020653
ATGGAATCAACTTGTGGTTCTCTTTTGTTAGAGCTTCAGAAAATATGGGATGAAGTTGGAGAGGCTGATAACGATAGGGACAGAATGCTTTTTGAGCTTGAACAAGAATGTCTGGATGCATATAGAAGGAAAGTGGATCAAGCAAACCGTTCAAGAGCTCAGCTGAGGCAGGCAGTTGCTGATGCTGAAGCACAGCTTGCGGACATTAGCGCTGCATTGGGAGACCGACCAGCTCATATAAAGAAGAGTTCTGGGAGCCT...

Protein

3 records

下载 Protein FASTA

XP_057805599.1
MESTCGSLLLELQKIWDEVGEADNDRDRMLFELEQECLDAYRRKVDQANRSRAQLRQAVADAEAQLADISAALGDRPAHIKKSSGSLKQELETIVPQLEDMTEKRNERKNQFSELLKQINSISKELAGSTETCLDEMSIDESDLSIKKLDDLHTQLLLLQKEKDERLKQLLHLLNIVNALCLVLGMDFKSTVCSVHPSLDNACERKSISADTIQGLSAMICRLKNVKLQRMQTLQDLAMTMVELWTLMDTPVEEQQMFQN...

XP_057805600.1
MESTCGSLLLELQKIWDEVGEADNDRDRMLFELEQECLDAYRRKVDQANRSRAQLRQAVADAEAQLADISAALGDRPAHIKKSSGSLKQELETIVPQLEDMTEKRNERKNQFSELLKQINSISKELAGSTETCLDEMSIDESDLSIKKLDDLHTQLLLLQKEKDERLKQLLHLLNIVNALCLVLGMDFKSTVCSVHPSLDNACERKSISADTIQGLSAMICRLKNVKLQRMQTLQDLAMTMVELWTLMDTPVEEQQMFQN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器