Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003809`

染色体: Chr04 坐标: 54252933-54255552 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003809`
名称	SmilChr04G003809
描述	serine/arginine-rich splicing factor RS41-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54252933 - 54255552 / `+`

ID 对照

NCBI Gene ID	`LOC131020707`
GeneID	`131020707`
locus_tag	`-`
NCBI Name	`LOC131020707`
原始查询	`SmilChr04G003809`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/arginine-rich splicing factor RS41-like
产物	serine/arginine-rich splicing factor RS41-like
Arabidopsis	`AT4G25500` (RS40) arginine/serine-rich splicing factor 35 [Source:NCBI gene (formerly Entrezgene);Acc:828654] identity=64; qcov=0.972; evalue=5.59e-95; confidence=high
Rice	`Os02g0122800` (P0575F10.6-1) - identity=68.2; qcov=0.992; evalue=6.01e-115; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0016607 (nuclear speck)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131020707

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805681.1`
2	Nuclear speckle	核斑点	0.80000	`XP_057805681.1`
3	Nucleoplasm	核质	0.80000	`XP_057805681.1`
4	Cytoplasm	细胞质	0.20000	`XP_057805682.1`
5	Chromosome	染色体	0.00000	`XP_057805681.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54253960`	`T`	`TA`	1bp_insertion	frameshift_variant	152	A11,A13,A14,A15,A16,A18,A19,A21,A23,A3,A4,A5,A6,A7,A9,B10,B101,B102,B103,B104,B105,B106,B108,B11,B110,B111,B117,B120,B122,B125,B126,B127,B128,B134,B135,B137,B138,B14,B140,B15,B17,B18,B19,B20,B21,B22,B23,B26,B27,B28,B30,B31,B33,B34,B35,B37,B38,B39,B41,B42,B45,B47,B48,B49,B5,B52,B53,B54,B55,B56,B57,B59,B60,B62,B66,B68,B70,B71,B73,B74,B76,B77,B78,B79,B8,B80,B82,B84,B86,B87,B88,B91,B92,B93,B94,B95,B96,C1,C13,C14,C15,C16,C17,C19,C2,C22,C23,C24,C25,C29,C3,C30,C34,C38,C4,C40,C46,C47,C48,C49,C5,C50,C52,C53,C54,C56,C57,C58,C59,C6,C61,C63,C66,C67,C73,C74,C76,C78,C8,C80,C82,C84,C86,C87,C9,D10,D11,D2,D3,D5,D8,D9
`Chr4:54254180`	`TC`	`T`	1bp_deletion	frameshift_variant	17	A24,A25,B105,B25,B36,B46,B51,B78,B81,B86,B89,C49,C66,C7,C86,D10,D9
`Chr4:54254184`	`C`	`CT`	1bp_insertion	frameshift_variant	18	A24,B105,B136,B139,B25,B36,B46,B51,B78,B81,B86,B89,C49,C66,C7,C86,D10,D9
`Chr4:54254229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B4,B59
`Chr4:54254247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:54254442`	`ACG`	`A`	2bp_deletion	frameshift_variant	28	A18,A21,A9,B123,B124,B19,B22,B36,B46,B47,B64,B66,B68,B80,B81,B90,B97,B99,C17,C26,C33,C53,C59,C6,C78,C83,D10,D5
`Chr4:54254445`	`A`	`AAG`	2bp_insertion	frameshift_variant	26	A18,A21,A9,B123,B124,B19,B22,B36,B46,B47,B64,B66,B68,B80,B81,B90,B99,C17,C33,C53,C59,C6,C78,C83,D10,D5
`Chr4:54254502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B92
`Chr4:54254598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr4:54255273`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C62
`Chr4:54255273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805681.1

233 aa

116

233

RRM_1

PF00076 RRM_1 14-41 aa PF00076 RRM_1 76-138 aa

XP_057805682.1

254 aa

127

254

RRM_1

PF00076 RRM_1 4-62 aa PF00076 RRM_1 97-159 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805681.1`	Pfam	`PF00076`	RRM_1	Domain	14	41	1.1e-19	70.7	RNA recognition motif
`XP_057805681.1`	Pfam	`PF00076`	RRM_1	Domain	76	138	1.1e-19	70.7	RNA recognition motif
`XP_057805682.1`	Pfam	`PF00076`	RRM_1	Domain	4	62	6.4e-29	100.3	RNA recognition motif
`XP_057805682.1`	Pfam	`PF00076`	RRM_1	Domain	97	159	6.4e-29	100.3	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949699.1
GGGCCTCGAGGCCCAAATTGTGAAGGCCCAAAAACCTCACTCTAAAATCTAAAGCCCTCATTTCATTTCAATTTCTTTACCTCACCTCTTACTTCTAGGGTTTCTCAACATCAATCCAGCTGCAAAGGGAGGCGCCAAGGGATTTTTGAAAAAAATTCAGGATCATGAAGCCTATATTTTGCGGGAATCTGGACTTTGACGCTCGGCAATCCGACGTTGATCGCCTTTTCAGAAAATATGGGAGGGTGGATCGCGTAGAT...

XM_057949698.1
GGATTTTTGAAAAAAATTCAGGATCATGAAGCCTATATTTTGCGGGAATCTGGACTTTGACGCTCGGCAATCCGACGTTGATCGCCTTTTCAGAAAATATGGGAGGGTGGATCGCGTAGATATGAAATCTGGATTACTTGGATATTCCTTGGTCTTCCTGGATGGATGGTTCAATCTGCTTTAATTTTCTGGCTTGTGCCCAAGATACATGTTTGTGTCTGTCCGAAAGAATCGATATTTCTGCCATGCTCTACCATTCC...

CDS

2 records

下载 CDS FASTA

LOC131020707
ATGAAGCCTATATTTTGCGGGAATCTGGACTTTGACGCTCGGCAATCCGACGTTGATCGCCTTTTCAGAAAATATGGGAGGGTGGATCGCGTAGATATGAAATCTGGATTCTGCTTCGTCTATATGGAAGATGAGCGGGATGCAGAGGATGCGATCCGGAAGCTTGACAGGATAGAGTTTGGCAGGAAAGGGCGCAGACTTCGTGTTGAGTGGACCAAGCAAGAGCGTGGTAGCAGAAGGCCTGATAGCTCCAGAAAATC...

LOC131020707
ATGTTTCGACATAGATTCATGTTCAATTCGGATCCAGTGGCAGGATTCTGCTTCGTCTATATGGAAGATGAGCGGGATGCAGAGGATGCGATCCGGAAGCTTGACAGGATAGAGTTTGGCAGGAAAGGGCGCAGACTTCGTGTTGAGTGGACCAAGCAAGAGCGTGGTAGCAGAAGGCCTGATAGCTCCAGAAAATCTTCTTCCAGCGCACGACCTTCAAAGACTTTATTCGTCATAAACTTTGATCCTATCAATACTAG...

Protein

2 records

下载 Protein FASTA

XP_057805681.1
MFRHRFMFNSDPVAGFCFVYMEDERDAEDAIRKLDRIEFGRKGRRLRVEWTKQERGSRRPDSSRKSSSSARPSKTLFVINFDPINTRTRDIERYFEHYGKISNVRIRRNFAFVQYEMQEDATRALEETHLSKFMDRVISVEYAIREDDDKRNGHSPDGRGRDASPDRRNYDRRRSPSPYQRDRGSPDYGHGSVPNSRSERRGSPQYGRAESPANDRYNSRSPPPPRERSRSRS

XP_057805682.1
MKPIFCGNLDFDARQSDVDRLFRKYGRVDRVDMKSGFCFVYMEDERDAEDAIRKLDRIEFGRKGRRLRVEWTKQERGSRRPDSSRKSSSSARPSKTLFVINFDPINTRTRDIERYFEHYGKISNVRIRRNFAFVQYEMQEDATRALEETHLSKFMDRVISVEYAIREDDDKRNGHSPDGRGRDASPDRRNYDRRRSPSPYQRDRGSPDYGHGSVPNSRSERRGSPQYGRAESPANDRYNSRSPPPPRERSRSRS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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