Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003819`

染色体: Chr04 坐标: 54338492-54342182 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003819`
名称	SmilChr04G003819
描述	E3 ubiquitin-protein ligase At1g12760-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54338492 - 54342182 / `+`

ID 对照

NCBI Gene ID	`LOC131020681`
GeneID	`131020681`
locus_tag	`-`
NCBI Name	`LOC131020681`
原始查询	`SmilChr04G003819`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase At1g12760-like
产物	E3 ubiquitin-protein ligase At1g12760-like
Arabidopsis	`AT3G61180` (AT3G61180) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825290] identity=57.8; qcov=1; evalue=1.6e-155; confidence=high
Rice	`Os02g0674700` - identity=62.9; qcov=0.99; evalue=4.19e-155; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131020681

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	0.80000	`XP_057805639.1`
2	Vacuole	液泡	0.80000	`XP_057805640.1`
3	Nucleus membrane	核膜	0.20000	`XP_057805639.1`
4	Endosome	内体	0.20000	`XP_057805640.1`
5	Cell membrane	细胞膜	0.20000	`XP_057805639.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54340374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:54341560`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C50
`Chr4:54341560`	`C`	`CG`	1bp_insertion	CDS_variant	1	C50
`Chr4:54341562`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	C50
`Chr4:54341562`	`TCG`	`T`	2bp_deletion	CDS_variant	1	C50
`Chr4:54341586`	`G`	`GT`	1bp_insertion	frameshift_variant	33	A7,B10,B100,B131,B133,B28,B40,B46,B49,B52,B59,B6,B76,B79,B87,B88,C10,C20,C22,C25,C27,C35,C41,C42,C45,C52,C63,C64,C66,C7,C84,C87,D6
`Chr4:54341683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:54341703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C11
`Chr4:54341717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B7
`Chr4:54341731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr4:54341758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805640.1

384 aa

192

384

zf-RING_11

zf-RING_2

zf-C3HC4

PF17123 zf-RING_11 327-355 aa PF13639 zf-RING_2 327-369 aa PF00097 zf-C3HC4 328-368 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805640.1`	Pfam	`PF17123`	zf-RING_11	Domain	327	355	1.1e-08	35.4	RING-like zinc finger
`XP_057805640.1`	Pfam	`PF13639`	zf-RING_2	Domain	327	369	6.1e-14	52.7	Ring finger domain
`XP_057805640.1`	Pfam	`PF00097`	zf-C3HC4	Domain	328	368	0.00031	21.3	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949657.1
GTTTCTTGAGCTGTAGTATAACTTAATAATTGCTGCAACATGTTTATCAGCACTAATCTAGAAATCCCCCCTTAAAGAAACATTAACAAAAAATCTAGAAATCTCTCACAGTCACACTTGAACTCGATCTTCATCTCTGACCGTCCGATCACCCCGACATCAATACAACGTTCAAACAAAATTTCCAATCAAGAAACAGCGCAACACCGTAGCACACCTCCCCCCCCCCCCCCCCGCTCTCCGGCCAACAAAACGATGTC...

XM_057949656.1
TGAGCTGTAGTATAACTTAATAATTGCTGCAACATGTTTATCAGCACTAATCTAGAAATCCCCCCTTAAAGAAACATTAACAAAAAATCTAGAAATCTCTCACAGTCACACTTGAACTCGATCTTCATCTCTGACCGTCCGATCACCCCGACATCAATACAACGTTCAAACAAAATTTCCAATCAAGAAACAGCGCAACACCGTAGCACACCTCCCCCCCCCCCCCCCCGCTCTCCGGCCAACAAAACGATGTCGTCCAG...

CDS

2 records

下载 CDS FASTA

LOC131020681
ATGTCGTCCAGCGCCGACTCCCCGTCCCCCGCCGCCGTCGATACGACGCCGTTACTCGCCGACCAGATCTTCCGCGCCCGCCGCCGCCCCCGCTTCCTCCGCCGACCACCCAGCCTCCGCGGCGCCGCTAACTTCCTCCGTCGCGCCAGCAGCCGGAGCCGCGCCATGCGCGAGCCCTCTGTCCGCGTCCGAGAAGCAGCCACCGATCAAATCGAGGAGCGGCAGAGTGATTGGGCTTACTCTAAGCCGATAGTGATTTT...

Protein

2 records

下载 Protein FASTA

XP_057805639.1
MSSSADSPSPAAVDTTPLLADQIFRARRRPRFLRRPPSLRGAANFLRRASSRSRAMREPSVRVREAATDQIEERQSDWAYSKPIVILDLVWNIAFVIVSISVLIMSRNETPSMPLRLWTVGYALQCVLHAVCVCWEYKKRYSEQNLEVSDGAQLGHSRNYSNSSSGSDDVDSGGYFSDHRQSDDEASVAKHLESANTMFSFIWWIIGFYWVSAGGQSLTSEAPQLYWLCITFLAFDVFFVVICVAVACVIGLAVCCCLPC...

XP_057805640.1
MSSSADSPSPAAVDTTPLLADQIFRARRRPRFLRRPPSLRGAANFLRRASSRSRAMREPSVRVREAATDQIEERQSDWAYSKPIVILDLVWNIAFVIVSISVLIMSRNETPSMPLRLWTVGYALQCVLHAVCVCWEYKKRYSEQNLEVSDGAQLGHSRNYSNSSSGSDDVDSGGYFSDHRQSDDEASVAKHLESANTMFSFIWWIIGFYWVSAGGQSLTSEAPQLYWLCITFLAFDVFFVVICVAVACVIGLAVCCCLPC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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