当前解析结果
SmilChr04G003832| 统一新 Gene ID | SmilChr04G003832 |
|---|---|
| 名称 | SmilChr04G003832 |
| 描述 | uncharacterized SmilChr04G003832 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 54381035 - 54383686 / + |
| NCBI Gene ID | LOC131020698 |
|---|---|
| GeneID | 131020698 |
| locus_tag | - |
| NCBI Name | LOC131020698 |
| 原始查询 | SmilChr04G003832 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827978]; symbol=AT4G00560; hit=AT4G00560; species=arabidopsis; confidence=high |
| 产物 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827978]; symbol=AT4G00560; hit=AT4G00560; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G00560 (AT4G00560)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827978] identity=64.8; qcov=1.02; evalue=9.08e-154; confidence=high |
| Rice | Os02g0826200- identity=65.3; qcov=0.988; evalue=5.5e-153; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020698 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057805669.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057805669.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805669.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805669.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805669.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:54381310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B92 |
Chr4:54381375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:54381848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr4:54381890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr4:54382501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr4:54382574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:54382841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B104,C74 |
Chr4:54382858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B81 |
Chr4:54382897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:54383113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:54383209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr4:54383395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805669.1PF04321
RmlD_sub_bind 6-313 aa
PF02719
Polysacc_synt_2 7-163 aa
PF01370
Epimerase 7-223 aa
PF16363
GDP_Man_Dehyd 8-174 aa
PF01073
3Beta_HSD 8-181 aa
PF07993
NAD_binding_4 74-180 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805669.1 |
Pfam | PF04321 |
RmlD_sub_bind | Domain | 6 | 313 | 3.6e-44 | 151.7 | RmlD substrate binding domain |
XP_057805669.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 7 | 163 | 1.4e-05 | 25.1 | Polysaccharide biosynthesis protein |
XP_057805669.1 |
Pfam | PF01370 |
Epimerase | Family | 7 | 223 | 4.1e-23 | 82.7 | NAD dependent epimerase/dehydratase family |
XP_057805669.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 8 | 174 | 7.6e-13 | 49.3 | GDP-mannose 4,6 dehydratase |
XP_057805669.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 8 | 181 | 8.4e-06 | 25.7 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057805669.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 74 | 180 | 4.8e-08 | 33.2 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。