Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003840`

染色体: Chr04 坐标: 54425160-54432024 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003840`
名称	SmilChr04G003840
描述	DEAD-box ATP-dependent RNA helicase 6-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54425160 - 54432024 / `+`

ID 对照

NCBI Gene ID	`LOC131020668`
GeneID	`131020668`
locus_tag	`-`
NCBI Name	`LOC131020668`
原始查询	`SmilChr04G003840`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 6-like
产物	DEAD-box ATP-dependent RNA helicase 6-like
Arabidopsis	`AT4G00660` (RH8) RNAhelicase-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:828042] identity=81.9; qcov=1.04; evalue=0; confidence=high
Rice	`Os04g0533000` (OsRH6) - identity=80.3; qcov=1.03; evalue=0; confidence=high
GO	GO:0000932 (P-body); GO:0003724 (RNA helicase activity); GO:0003729 (mRNA binding); GO:0005524 (ATP binding); GO:0010494 (cytoplasmic stress granule); GO:0033962 (P-body assembly); GO:0034063 (stress granule assembly)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131020668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805622.1`
2	Nucleus	细胞核	0.80000	`XP_057805622.1`
3	Cytoplasmic granule	细胞质颗粒	0.80000	`XP_057805622.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057805622.1`
5	P-body	P-body	0.80000	`XP_057805622.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54425545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr4:54425596`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D9
`Chr4:54425596`	`GC`	`G`	1bp_deletion	CDS_variant	1	D9
`Chr4:54425745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:54426671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C74
`Chr4:54427896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:54428018`	`ATG`	`A`	2bp_deletion	frameshift_variant	56	A10,A18,A2,A20,A22,A25,A5,A6,B1,B102,B108,B113,B114,B120,B125,B126,B20,B23,B24,B35,B42,B46,B47,B53,B61,B65,B68,B70,B71,B72,B76,B86,B9,B90,C13,C14,C18,C37,C38,C42,C46,C47,C5,C58,C6,C61,C68,C71,C79,C8,C80,C83,C85,C9,D3,D7
`Chr4:54428021`	`C`	`CTT`	2bp_insertion	frameshift_variant	54	A10,A18,A2,A20,A22,A25,A5,A6,B1,B102,B108,B113,B114,B120,B125,B126,B20,B23,B24,B35,B42,B46,B47,B53,B61,B65,B68,B70,B71,B76,B86,B9,B90,C13,C14,C18,C37,C38,C42,C46,C47,C5,C58,C6,C61,C68,C71,C79,C8,C80,C83,C85,D3,D7
`Chr4:54428719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C46,C85
`Chr4:54428758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,C74
`Chr4:54428782`	`TGC`	`T`	2bp_deletion	frameshift_variant	89	A1,A15,A16,A18,A25,A3,A5,A7,A8,B1,B10,B102,B103,B107,B109,B11,B118,B12,B120,B121,B125,B127,B128,B130,B133,B138,B139,B2,B21,B26,B30,B31,B40,B42,B47,B48,B51,B53,B55,B57,B6,B60,B62,B65,B67,B69,B7,B70,B75,B8,B82,B85,B87,B88,B91,B92,C12,C14,C15,C2,C22,C23,C27,C28,C29,C3,C30,C32,C33,C35,C39,C40,C47,C49,C5,C51,C57,C6,C63,C64,C68,C69,C70,C71,C72,C74,C78,C80,C84
`Chr4:54428785`	`TAA`	`T`	2bp_deletion	frameshift_variant	44	A1,A16,A25,A6,A7,B1,B11,B127,B128,B130,B133,B138,B139,B26,B31,B40,B47,B51,B53,B57,B6,B65,B67,B75,B8,B91,C15,C2,C22,C27,C28,C30,C32,C35,C47,C5,C51,C57,C6,C64,C69,C71,C77,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805622.1

495 aa

248

495

DEAD

ResIII

Helicase_C

PF00270 DEAD 145-310 aa PF04851 ResIII 161-304 aa PF00271 Helicase_C 345-453 aa

XP_057805623.1

495 aa

248

495

DEAD

ResIII

Helicase_C

PF00270 DEAD 145-310 aa PF04851 ResIII 161-304 aa PF00271 Helicase_C 345-453 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805622.1`	Pfam	`PF00270`	DEAD	Domain	145	310	2.6e-48	164.6	DEAD/DEAH box helicase
`XP_057805622.1`	Pfam	`PF04851`	ResIII	Family	161	304	1.9e-05	25.3	Type III restriction enzyme, res subunit
`XP_057805622.1`	Pfam	`PF00271`	Helicase_C	Domain	345	453	2.5e-33	115.3	Helicase conserved C-terminal domain
`XP_057805623.1`	Pfam	`PF00270`	DEAD	Domain	145	310	2.6e-48	164.6	DEAD/DEAH box helicase
`XP_057805623.1`	Pfam	`PF04851`	ResIII	Family	161	304	1.9e-05	25.3	Type III restriction enzyme, res subunit
`XP_057805623.1`	Pfam	`PF00271`	Helicase_C	Domain	345	453	2.5e-33	115.3	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949640.1
AAATGTACATACACATAGTATGACATACTATATCTGATATACATTCGCATACATGTAAAAAATTTCCTCGGACGCCCTAGAAGGCTAGAACGGTCGCATTTCGTAGACTTTCAATTTCTCTGTCAACGTTCACTTTCCCTACGAAAATCTCTACAGCATATTCCTCCTCCTCAATTGCGAGACATCGCTGTTTCTCCTACCTCGCCCAAATTTTGTTTCTGAAGCAATTTTTGTAGAATCAGTCGATCTGTATCTCCAGA...

XM_057949639.1
CTGATATACATTCGCATACATGTAAAAAATTTCCTCGGACGCCCTAGAAGGCTAGAACGGTCGCATTTCGTAGACTTTCAATTTCTCTGTCAACGTTCACTTTCCCTACGAAAATCTCTACAGCATATTCCTCCTCCTCAATTGCGAGACATCGCTGTTTCTCCTACCTCGCCCAAATTTTGTTTCTGAAGCAATTTTTGTAGAATCAGTCGATCTGTATCTCCAGATTTTCAAGGCTGTGTATTTTGATACGAATTGAC...

CDS

2 records

下载 CDS FASTA

LOC131020668
ATGAGTTCGCGAGCGAGATACCCACCGCCGGGAATGGGCGGCGGCAGAGGCGGGGGCGGTGGAATGAACCCGAATGCCGGGCCAAACCCTAATTTTCAGCCGAGGAACCCTATGCACCAGTATGTGCAAAGAAGTCCAGCGCCTAGTAATCAGAATCATCAACTGTTTCAGAATCAGCAGCAGCAGCAGCAATGGCTGCGAAGAAATCAGCTGCCTCCTGCTGATTCCGGTGTCGACGAGGTTGAAAAGACCGTGCAGTC...

Protein

2 records

下载 Protein FASTA

XP_057805622.1
MSSRARYPPPGMGGGRGGGGGMNPNAGPNPNFQPRNPMHQYVQRSPAPSNQNHQLFQNQQQQQQWLRRNQLPPADSGVDEVEKTVQSEAIDSSSQDWKARLKLPPRDNRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLQIQVMATTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKNVCV...

XP_057805623.1
MSSRARYPPPGMGGGRGGGGGMNPNAGPNPNFQPRNPMHQYVQRSPAPSNQNHQLFQNQQQQQQWLRRNQLPPADSGVDEVEKTVQSEAIDSSSQDWKARLKLPPRDNRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLQIQVMATTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKNVCV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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