Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003861`

染色体: Chr04 坐标: 54548808-54554948 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003861`
名称	SmilChr04G003861
描述	beta-amylase 7
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54548808 - 54554948 / `-`

ID 对照

NCBI Gene ID	`LOC131020652`
GeneID	`131020652`
locus_tag	`-`
NCBI Name	`LOC131020652`
原始查询	`SmilChr04G003861`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-amylase 7
产物	beta-amylase 7
Arabidopsis	`AT2G45880` (BAM7) beta-amylase 7 [Source:NCBI gene (formerly Entrezgene);Acc:819196] identity=65.5; qcov=0.939; evalue=0; confidence=high
Rice	`Os09g0569200` - identity=72.1; qcov=0.614; evalue=0; confidence=high
GO	GO:0000272 (polysaccharide catabolic process); GO:0016161 (beta-amylase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01373 (Glyco_hydro_14); PF05687 (BES1_N)
InterPro	-
eggNOG	-
NR	GeneID:131020652

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805588.1`
2	Cytosol	细胞质基质	0.40000	`XP_057805596.1`
3	Cytoplasm	细胞质	0.20000	`XP_057805592.1`
4	Chromosome	染色体	0.00000	`XP_057805588.1`
5	Centromere	着丝粒	0.00000	`XP_057805588.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54550262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B29,B99,C3,C60
`Chr4:54550393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B110,B59,B75,C84
`Chr4:54550870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C63
`Chr4:54551451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B48
`Chr4:54551482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B27
`Chr4:54551512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:54552558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B122,B140,B84,C48
`Chr4:54552585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,C70
`Chr4:54552852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr4:54553084`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B71
`Chr4:54553084`	`TG`	`T`	1bp_deletion	CDS_variant	1	B71
`Chr4:54553697`	`G`	`A`	EMS_canonical_SNV	stop_gained	80	A11,A14,A18,A21,A23,A4,A5,A7,A9,B102,B103,B106,B11,B111,B115,B118,B119,B129,B133,B135,B137,B138,B15,B17,B18,B20,B26,B27,B29,B35,B36,B41,B45,B47,B49,B55,B59,B66,B67,B71,B75,B78,B8,B81,B86,B87,B89,B9,B91,B95,C13,C15,C18,C24,C27,C28,C34,C37,C38,C41,C42,C43,C44,C45,C47,C53,C54,C6,C60,C63,C64,C66,C67,C70,C72,C81,C83,C84,C86,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805588.1

699 aa

350

699

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-210 aa PF01373 Glyco_hydro_14 266-691 aa

XP_057805589.1

699 aa

350

699

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-210 aa PF01373 Glyco_hydro_14 266-691 aa

XP_057805590.1

698 aa

349

698

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-209 aa PF01373 Glyco_hydro_14 265-690 aa

XP_057805591.1

698 aa

349

698

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-209 aa PF01373 Glyco_hydro_14 265-690 aa

XP_057805592.1

690 aa

345

690

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-210 aa PF01373 Glyco_hydro_14 257-682 aa

XP_057805593.1

689 aa

344

689

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-209 aa PF01373 Glyco_hydro_14 256-681 aa

XP_057805594.1

670 aa

335

670

BES1_N

Glyco_hydro_14

PF05687 BES1_N 46-181 aa PF01373 Glyco_hydro_14 237-662 aa

XP_057805595.1

670 aa

335

670

BES1_N

Glyco_hydro_14

PF05687 BES1_N 46-181 aa PF01373 Glyco_hydro_14 237-662 aa

XP_057805596.1

669 aa

334

669

BES1_N

Glyco_hydro_14

PF05687 BES1_N 46-180 aa PF01373 Glyco_hydro_14 236-661 aa

XP_057805597.1

669 aa

334

669

BES1_N

Glyco_hydro_14

PF05687 BES1_N 46-180 aa PF01373 Glyco_hydro_14 236-661 aa

XP_057805598.1

637 aa

318

637

BES1_N

Glyco_hydro_14

PF05687 BES1_N 75-210 aa PF01373 Glyco_hydro_14 266-619 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805588.1`	Pfam	`PF05687`	BES1_N	Family	75	210	2.4e-38	132.6	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805588.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	266	691	1.6e-122	410.3	Glycosyl hydrolase family 14
`XP_057805589.1`	Pfam	`PF05687`	BES1_N	Family	75	210	2.4e-38	132.6	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805589.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	266	691	1.6e-122	410.3	Glycosyl hydrolase family 14
`XP_057805590.1`	Pfam	`PF05687`	BES1_N	Family	75	209	2e-38	132.8	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805590.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	265	690	1.6e-122	410.3	Glycosyl hydrolase family 14
`XP_057805591.1`	Pfam	`PF05687`	BES1_N	Family	75	209	2e-38	132.8	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805591.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	265	690	1.6e-122	410.3	Glycosyl hydrolase family 14
`XP_057805592.1`	Pfam	`PF05687`	BES1_N	Family	75	210	2.4e-38	132.6	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805592.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	257	682	1.6e-122	410.3	Glycosyl hydrolase family 14
`XP_057805593.1`	Pfam	`PF05687`	BES1_N	Family	75	209	2e-38	132.8	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805593.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	256	681	1.6e-122	410.3	Glycosyl hydrolase family 14
`XP_057805594.1`	Pfam	`PF05687`	BES1_N	Family	46	181	2.3e-38	132.7	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805594.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	237	662	1.5e-122	410.4	Glycosyl hydrolase family 14
`XP_057805595.1`	Pfam	`PF05687`	BES1_N	Family	46	181	2.3e-38	132.7	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805595.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	237	662	1.5e-122	410.4	Glycosyl hydrolase family 14
`XP_057805596.1`	Pfam	`PF05687`	BES1_N	Family	46	180	1.8e-38	133.0	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805596.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	236	661	1.4e-122	410.4	Glycosyl hydrolase family 14
`XP_057805597.1`	Pfam	`PF05687`	BES1_N	Family	46	180	1.8e-38	133.0	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805597.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	236	661	1.4e-122	410.4	Glycosyl hydrolase family 14
`XP_057805598.1`	Pfam	`PF05687`	BES1_N	Family	75	210	2.1e-38	132.8	BES1/BZR1 plant transcription factor, N-terminal
`XP_057805598.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	266	619	5.8e-115	385.4	Glycosyl hydrolase family 14

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057949613.1
ATTCCGGCGTTCCGGCCGCTGTCTTCTTCTCCGGTCAGTTTGGCTTGCCGGAACTTGGAGTGGATAACTTTCCCGCGGCGCTTGTCTGGATCCGCGTGCGAGCGGTCTGAGATCTTTCCGAAGAGCGTGGAACGACGGCGGAATCGGAGATCCTGAGTACGAATGCAAACACCCGCATTCGATGGAAAGTATGGCACAGGTAAACTATATATAAGGTGTGAAGGTGGATGTACCTTCTTCAGCATGACTAGTTACTGCGA...

XM_057949612.1
ATTCCGGCGTTCCGGCCGCTGTCTTCTTCTCCGGTCAGTTTGGCTTGCCGGAACTTGGAGTGGATAACTTTCCCGCGGCGCTTGTCTGGATCCGCGTGCGAGCGGTCTGAGATCTTTCCGAAGAGCGTGGAACGACGGCGGAATCGGAGATCCTGAGTACGAATGCAAACACCCGCATTCGATGGAAAGTATGGCACAGGTAAACTATATATAAGGTGTGAAGGTGGATGTACCTTCTTCAGCATGACTAGTTACTGCGA...

CDS

11 records

下载 CDS FASTA

LOC131020652
ATGGCAGCAGAGATGCAGAGGTTCGGCGCAAGTGAAGAAGATGATGATGAAATGGGGATGGATGTGAAGGAGGAAGATGATGATGACGACGAAGATGAAGAGAAGAACATGGTAACCCCTAATATGGTTGGAGGGGCTCGAAGGTGTAGGCCTCAGGAAGAGAAAGAGAGAACAAAGCTGCGGGAGCGACAGCGTCGAGCGATCACAGCAAAGATATTGGCTGGGCTTCGTAGGCACGGCAACTACAATCTTAGAGTCAG...

Protein

11 records

下载 Protein FASTA

XP_057805588.1
MAAEMQRFGASEEDDDEMGMDVKEEDDDDDEDEEKNMVTPNMVGVDVGVLSTGGSNRYVHNQQYQDPQTPQVGGARRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRAQQSTRPTGGAQNTAVTSSSSQMPAQPTSPTSLRGISPGYKSTVDYSSSHLKGVFVPTSSPYDVSSSTRSQASAMIGDGGELPNDPLLGGSIDSVDTTQVVDMPSKLQERDFSGTS...

XP_057805589.1
MAAEMQRFGASEEDDDEMGMDVKEEDDDDDEDEEKNMVTPNMVGVDVGVLSTGGSNRYVHNQQYQDPQTPQVGGARRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRAQQSTRPTGGAQNTAVTSSSSQMPAQPTSPTSLRGISPGYKSTVDYSSSHLKGVFVPTSSPYDVSSSTRSQASAMIGDGGELPNDPLLGGSIDSVDTTQVVDMPSKLQERDFSGTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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