Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003869`

染色体: Chr04 坐标: 54583727-54588346 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003869`
名称	SmilChr04G003869
描述	SKP1-like protein 21
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54583727 - 54588346 / `-`

ID 对照

NCBI Gene ID	`LOC131020686`
GeneID	`131020686`
locus_tag	`-`
NCBI Name	`LOC131020686`
原始查询	`SmilChr04G003869`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SKP1-like protein 21
产物	SKP1-like protein 21
Arabidopsis	`AT3G61415` (SK21) SKP1-like 21 [Source:NCBI gene (formerly Entrezgene);Acc:825314] identity=60.1; qcov=1; evalue=2.89e-137; confidence=high
Rice	`Os03g0107000` - identity=75.6; qcov=0.584; evalue=1.46e-115; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process); GO:0097602 (cullin family protein binding)
KEGG	-
Pfam	PF01466 (Skp1); PF03931 (Skp1_POZ)
InterPro	-
eggNOG	-
NR	GeneID:131020686

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805649.1`
2	Cytoplasm	细胞质	1.00000	`XP_057805649.1`
3	Cytosol	细胞质基质	0.40000	`XP_057805649.1`
4	Chromosome	染色体	0.00000	`XP_057805649.1`
5	Centromere	着丝粒	0.00000	`XP_057805649.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54584525`	`T`	`TA`	1bp_insertion	frameshift_variant	6	A25,B121,B34,C12,C63,C72
`Chr4:54584529`	`AC`	`A`	1bp_deletion	frameshift_variant	55	A16,A18,A2,A20,A23,A4,A7,B105,B123,B13,B131,B132,B134,B14,B18,B22,B26,B30,B31,B32,B47,B57,B59,B60,B63,B69,B74,B8,B80,B82,B83,B84,B86,B90,B92,C15,C20,C31,C36,C4,C40,C42,C43,C46,C52,C55,C59,C70,C75,C80,C81,C84,C85,C86,D8
`Chr4:54584539`	`GAA`	`G`	2bp_deletion	frameshift_variant	88	A10,A14,A15,A19,A24,A8,A9,B1,B10,B101,B104,B108,B109,B110,B111,B112,B114,B115,B117,B118,B120,B122,B126,B127,B133,B137,B138,B139,B17,B19,B2,B20,B25,B28,B36,B37,B38,B39,B4,B46,B49,B5,B50,B54,B55,B56,B58,B6,B61,B62,B64,B65,B73,B75,B88,B93,B95,B96,B97,B99,C11,C19,C22,C23,C29,C30,C37,C38,C41,C44,C45,C47,C5,C50,C51,C53,C58,C6,C61,C67,C69,C7,C74,C77,C83,D1,D11,D2
`Chr4:54584610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B63,B77,C1,C84
`Chr4:54584634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:54585964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:54586009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr4:54586172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C16,C45
`Chr4:54586274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C76,D11,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805649.1

370 aa

185

370

Skp1_POZ

Skp1

PF03931 Skp1_POZ 18-79 aa PF01466 Skp1 116-153 aa

XP_057805650.1

370 aa

185

370

Skp1_POZ

Skp1

PF03931 Skp1_POZ 18-79 aa PF01466 Skp1 116-153 aa

XP_057805651.1

365 aa

182

365

Skp1_POZ

Skp1

PF03931 Skp1_POZ 18-79 aa PF01466 Skp1 116-153 aa

XP_057805652.1

365 aa

182

365

Skp1_POZ

Skp1

PF03931 Skp1_POZ 18-79 aa PF01466 Skp1 116-153 aa

XP_057805653.1

365 aa

182

365

Skp1_POZ

Skp1

PF03931 Skp1_POZ 18-79 aa PF01466 Skp1 116-153 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805649.1`	Pfam	`PF03931`	Skp1_POZ	Domain	18	79	2.6e-05	25.0	Skp1 family, tetramerisation domain
`XP_057805649.1`	Pfam	`PF01466`	Skp1	Domain	116	153	4e-12	46.5	Skp1 family, dimerisation domain
`XP_057805650.1`	Pfam	`PF03931`	Skp1_POZ	Domain	18	79	2.6e-05	25.0	Skp1 family, tetramerisation domain
`XP_057805650.1`	Pfam	`PF01466`	Skp1	Domain	116	153	4e-12	46.5	Skp1 family, dimerisation domain
`XP_057805651.1`	Pfam	`PF03931`	Skp1_POZ	Domain	18	79	2.4e-05	25.1	Skp1 family, tetramerisation domain
`XP_057805651.1`	Pfam	`PF01466`	Skp1	Domain	116	153	3.9e-12	46.5	Skp1 family, dimerisation domain
`XP_057805652.1`	Pfam	`PF03931`	Skp1_POZ	Domain	18	79	2.4e-05	25.1	Skp1 family, tetramerisation domain
`XP_057805652.1`	Pfam	`PF01466`	Skp1	Domain	116	153	3.9e-12	46.5	Skp1 family, dimerisation domain
`XP_057805653.1`	Pfam	`PF03931`	Skp1_POZ	Domain	18	79	2.4e-05	25.1	Skp1 family, tetramerisation domain
`XP_057805653.1`	Pfam	`PF01466`	Skp1	Domain	116	153	3.9e-12	46.5	Skp1 family, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057949668.1
TATATATTTATTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCATCATATTTATCCATTTTACAGCTTTTTCCGACAACCGCCATTTTCATATTCAAAGCTCCGTTCAGCGGGGATTGTTTTTTCCAGATAAATACTTGTGAAACTGCTTTCTCAGGCTCCCTACTTTTCTCAAACTTCAGTACAATGATAGAAGCTGATAGTGAAATTATAAAGCCTGAGATTCTGAAGGCTTATGTGTGGCTTCAA...

XM_057949666.1
TATATATTTATTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCATCATATTTATCCATTTTACAGCTTTTTCCGACAACCGCCATTTTCATATTCAAAGCTCCGTTCAGCGGGGATTGTTTTTTCCAGATAAATACTTGTGAAACTGCTTTCTCAGGCTCCCTACTTTTCTCAAACTTCAGTACAATGATAGAAGCTGATAGTGAAATTATAAAGCCTGAGATTCTGAAGGCTTATGTGTGGCTTCAA...

CDS

5 records

下载 CDS FASTA

LOC131020686
ATGATAGAAGCTGATAGTGAAATTATAAAGCCTGAGATTCTGAAGGCTTATGTGTGGCTTCAAACTTCTGATGATTCAATACAGCAAGTTGAGCAAGAAATTGCCATGTTTTGTCCATTCATATGTCATGAAATACATTCAGGCATGGGATCTTCTAAGAATTATCCTATCTCCCTTCCTCCACGAGTCAATCCTCCTATGTTAAGCCTAATTCTTGACTACTGCCGGTTTCATCAAGTACCAGGGCGCTCTAACAAGGA...

Protein

5 records

下载 Protein FASTA

XP_057805649.1
MIEADSEIIKPEILKAYVWLQTSDDSIQQVEQEIAMFCPFICHEIHSGMGSSKNYPISLPPRVNPPMLSLILDYCRFHQVPGRSNKERKSFDEKFVRLGTKRLCELTSAADSLQLKPLVDLTSRSLARVIEGKSPEEIREIFHLPDDLTEEEKLEPIKNTMDDPRIRLLNRLYARKRKELKEREKLKKIEVEEDQADDRSVDDLMSFINGDNEDSKGSASSKHKKKNRKRKDNHKTAPSNCIGTSVRNGVHKNKETDEVV...

XP_057805650.1
MIEADSEIIKPEILKAYVWLQTSDDSIQQVEQEIAMFCPFICHEIHSGMGSSKNYPISLPPRVNPPMLSLILDYCRFHQVPGRSNKERKSFDEKFVRLGTKRLCELTSAADSLQLKPLVDLTSRSLARVIEGKSPEEIREIFHLPDDLTEEEKLEPIKNTMDDPRIRLLNRLYARKRKELKEREKLKKIEVEEDQADDRSVDDLMSFINGDNEDSKGSASSKHKKKNRKRKDNHKTAPSNCIGTSVRNGVHKNKETDEVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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