Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003885`

染色体: Chr04 坐标: 54674283-54677833 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003885`
名称	SmilChr04G003885
描述	probable polygalacturonase
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54674283 - 54677833 / `-`

ID 对照

NCBI Gene ID	`LOC131020673`
GeneID	`131020673`
locus_tag	`-`
NCBI Name	`LOC131020673`
原始查询	`SmilChr04G003885`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable polygalacturonase
产物	probable polygalacturonase
Arabidopsis	`AT3G61490` (AT3G61490) Pectin lyase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825322] identity=73.3; qcov=0.987; evalue=0; confidence=high
Rice	`Os06g0106800` - identity=66.3; qcov=0.977; evalue=0; confidence=high
GO	GO:0004650 (polygalacturonase activity); GO:0005975 (carbohydrate metabolic process)
KEGG	-
Pfam	PF00295 (Glyco_hydro_28)
InterPro	-
eggNOG	-
NR	GeneID:131020673

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057805628.1`
2	Cell wall	细胞壁	0.60000	`XP_057805628.1`
3	Nucleus	细胞核	0.00000	`XP_057805628.1`
4	Chromosome	染色体	0.00000	`XP_057805628.1`
5	Centromere	着丝粒	0.00000	`XP_057805628.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54674472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B130,C70,C78
`Chr4:54674549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:54674562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,B97
`Chr4:54674566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr4:54674585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B13,B77
`Chr4:54674633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B21,B40,C10
`Chr4:54674681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B18,B26,B53,B99
`Chr4:54674684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C30,C51
`Chr4:54674705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B41
`Chr4:54674723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr4:54674820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B120,B126,B137,B37,B93
`Chr4:54674891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805628.1

474 aa

237

474

Glyco_hydro_28

PF00295 Glyco_hydro_28 144-425 aa

XP_057805629.1

474 aa

237

474

Glyco_hydro_28

PF00295 Glyco_hydro_28 144-425 aa

XP_057805630.1

474 aa

237

474

Glyco_hydro_28

PF00295 Glyco_hydro_28 144-425 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805628.1`	Pfam	`PF00295`	Glyco_hydro_28	Repeat	144	425	1.5e-38	133.4	Glycosyl hydrolases family 28
`XP_057805629.1`	Pfam	`PF00295`	Glyco_hydro_28	Repeat	144	425	1.5e-38	133.4	Glycosyl hydrolases family 28
`XP_057805630.1`	Pfam	`PF00295`	Glyco_hydro_28	Repeat	144	425	1.5e-38	133.4	Glycosyl hydrolases family 28

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949645.1
ACATCACCTATAAATGTGCTTATTTAGGTATTTACACTCCAAGCAAAATAAAAGGATTGTGGAGAAAATCAACAACACTTTGAAAAAATCATGAATGCGATGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGCTGATATTTGCAAGTGGAGGAGTTGAATGCAGAAGCAGAGAAGGAAGGATTGCAGAGTCATTCGAGTATTCAGCAATCAGCTGCAGAGGCCACAGCGCATCGATCGTGGAATTCGGAGGCGTCGGCGA...

XM_057949647.1
AAATAAAAGGATTGTGGAGAAAATCAACAACACTTTGAAAAACTATTTGGTGCTAGATCATGAATGCGATGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGCTGATATTTGCAAGTGGAGGAGTTGAATGCAGAAGCAGAGAAGGAAGGATTGCAGAGTCATTCGAGTATTCAGCAATCAGCTGCAGAGGCCACAGCGCATCGATCGTGGAATTCGGAGGCGTCGGCGACGGAAAGACGCTGAATACGGCGGCTTTCCGG...

CDS

3 records

下载 CDS FASTA

LOC131020673
ATGAATGCGATGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGCTGATATTTGCAAGTGGAGGAGTTGAATGCAGAAGCAGAGAAGGAAGGATTGCAGAGTCATTCGAGTATTCAGCAATCAGCTGCAGAGGCCACAGCGCATCGATCGTGGAATTCGGAGGCGTCGGCGACGGAAAGACGCTGAATACGGCGGCTTTCCGGCGGGCGGTGGACGAGCTGAGCAAGCACGCATCAGACGGCGGGGCGCAGCTGTTCGTCCC...

Protein

3 records

下载 Protein FASTA

XP_057805628.1
MNAMVAAAAAAAVVLIFASGGVECRSREGRIAESFEYSAISCRGHSASIVEFGGVGDGKTLNTAAFRRAVDELSKHASDGGAQLFVPAGKWLTGSFNLTSHFTLYLHKDAILLASQDIKSWGVVDPLPSYGHGRDTAGGRYISLIFGTNLTDVVITGENGTIDGQGGVWWQQFHKKKLKYTRPYLIEIMHSHKIQISNLTLLNSPSWNVHPVYTSDIIIQGITILAPVTSPNTDGINPDSCTSTRIEDTYIVSGDDCIAV...

XP_057805629.1
MNAMVAAAAAAAVVLIFASGGVECRSREGRIAESFEYSAISCRGHSASIVEFGGVGDGKTLNTAAFRRAVDELSKHASDGGAQLFVPAGKWLTGSFNLTSHFTLYLHKDAILLASQDIKSWGVVDPLPSYGHGRDTAGGRYISLIFGTNLTDVVITGENGTIDGQGGVWWQQFHKKKLKYTRPYLIEIMHSHKIQISNLTLLNSPSWNVHPVYTSDIIIQGITILAPVTSPNTDGINPDSCTSTRIEDTYIVSGDDCIAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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