Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003893`

染色体: Chr04 坐标: 54728801-54730380 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003893`
名称	SmilChr04G003893
描述	WRKY transcription factor 22-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54728801 - 54730380 / `+`

ID 对照

NCBI Gene ID	`LOC131020704`
GeneID	`131020704`
locus_tag	`-`
NCBI Name	`LOC131020704`
原始查询	`SmilChr04G003893`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WRKY transcription factor 22-like
产物	WRKY transcription factor 22-like
Arabidopsis	`AT4G01250` (WRKY22) WRKY family transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:827896] identity=43.8; qcov=1.08; evalue=4.7e-65; confidence=medium
Rice	`Os02g0265200` (OsWRKY39) - identity=70.4; qcov=0.353; evalue=5.68e-42; confidence=low
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF03106 (WRKY)
InterPro	-
eggNOG	-
NR	GeneID:131020704

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805676.1`
2	Chromosome	染色体	0.00000	`XP_057805676.1`
3	Centromere	着丝粒	0.00000	`XP_057805676.1`
4	Chromatin	染色质	0.00000	`XP_057805676.1`
5	Telomere	端粒	0.00000	`XP_057805676.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54729138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr4:54729147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,C17,C52
`Chr4:54729171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A2,B100,C29
`Chr4:54729315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:54729326`	`AG`	`A`	1bp_deletion	frameshift_variant	34	A21,A23,A8,B11,B112,B113,B120,B123,B128,B129,B25,B29,B32,B42,B43,B56,B6,B76,B80,B82,B86,B87,B96,B99,C17,C18,C19,C55,C63,C71,C78,C8,D1,D4
`Chr4:54729328`	`CAG`	`C`	2bp_deletion	frameshift_variant	34	A21,A23,A8,B11,B112,B113,B120,B123,B128,B129,B25,B29,B32,B42,B43,B56,B6,B76,B80,B82,B86,B87,B96,B99,C17,C18,C19,C55,C63,C71,C78,C8,D1,D4
`Chr4:54729348`	`G`	`GC`	1bp_insertion	frameshift_variant	3	A2,C5,C85
`Chr4:54729348`	`G`	`GC`	1bp_insertion	CDS_variant	3	A2,C5,C85
`Chr4:54729349`	`A`	`AGC`	2bp_insertion	frameshift_variant	3	A2,C5,C85
`Chr4:54729349`	`A`	`AGC`	2bp_insertion	CDS_variant	3	A2,C5,C85
`Chr4:54729776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr4:54729848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805676.1

282 aa

141

282

WRKY

PF03106 WRKY 152-209 aa

XP_057805677.1

278 aa

139

278

WRKY

PF03106 WRKY 152-205 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805676.1`	Pfam	`PF03106`	WRKY	Domain	152	209	6.1e-26	91.1	WRKY DNA -binding domain
`XP_057805677.1`	Pfam	`PF03106`	WRKY	Domain	152	205	4.6e-19	69.1	WRKY DNA -binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949693.1
CACAGCAAAGAATCCCCCAAAAAGAAGATAGAGCAAAATCCTCTCTTATAGTGCCATCCCAACCACTTTATTTGGAAAAAAGCAATTATGCATACATACCTCACTTTCTCTCTCTACCCATAAAAAACCGTCCATCTCCTCTCTCTCTCTCTCTCTCTTCACGCCTCCAAAAGTCAGCGCGGGCGCCTTCGTTTTGTCTCTACATATCAGAGCAGAAAAAAGGAGAGAGAAAGAAGGAAGGAAAATTAATGGAGGATGAC...

XM_057949694.1
ATCCCCCAAAAAGAAGATAGAGCAAAATCCTCTCTTATAGTGCCATCCCAACCACTTTATTTGGAAAAAAGCAATTATGCATACATACCTCACTTTCTCTCTCTACCCATAAAAAACCGTCCATCTCCTCTCTCTCTCTCTCTCTCTTCACGCCTCCAAAAGTCAGCGCGGGCGCCTTCGTTTTGTCTCTACATATCAGAGCAGAAAAAAGGAGAGAGAAAGAAGGAAGGAAAATTAATGGAGGATGACTGGGATCTCCA...

CDS

2 records

下载 CDS FASTA

LOC131020704
ATGGAGGATGACTGGGATCTCCACGCCGTGGTTAGAAGCTGCTCCTCCTCCACCGCCACCGCCACCACCGCCGCCACCGCCACCTCCTCCGCCGCCACCGCCGGCTGCCAAAACCTCAGCAGCTTCGAGCAAGATTGCACCTTTAGTTGGTGTAATAAAGATCCGTTTGAGCCCAGAAGAAGTAGAAGCTTCGTAGAAGACTTGCATGAGCTTTGGAAACCTTTCTTCCCCAAACAACAAATCCCCATTTCTCCCCTCTC...

Protein

2 records

下载 Protein FASTA

XP_057805676.1
MEDDWDLHAVVRSCSSSTATATTAATATSSAATAGCQNLSSFEQDCTFSWCNKDPFEPRRSRSFVEDLHELWKPFFPKQQIPISPLSILQDQQQQQQQQQKEIKQIISPQKQQLFSIVNGSKPSHHPTPRSKKRKIHSKKVCHVPAESLSSDVWSWRKYGQKPIKGSPYPRGYYRCSTSKGCMARKQVERNRSDPGMFIITYTGDHSHPVPTHRNSLAGSTRHREAKKPETSPPPPEKMESSREDLADVEEEEEEDDDFF...

XP_057805677.1
MEDDWDLHAVVRSCSSSTATATTAATATSSAATAGCQNLSSFEQDCTFSWCNKDPFEPRRSRSFVEDLHELWKPFFPKQQIPISPLSILQDQQQQQQQQQKEIKQIISPQKQQLFSIVNGSKPSHHPTPRSKKRKIHSKKVCHVPAESLSSDVWSWRKYGQKPIKGSPYPRCSTSKGCMARKQVERNRSDPGMFIITYTGDHSHPVPTHRNSLAGSTRHREAKKPETSPPPPEKMESSREDLADVEEEEEEDDDFFAGLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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