Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003903`

染色体: Chr04 坐标: 54801861-54808607 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003903`
名称	SmilChr04G003903
描述	uncharacterized SmilChr04G003903
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54801861 - 54808607 / `+`

ID 对照

NCBI Gene ID	`LOC131020762`
GeneID	`131020762`
locus_tag	`-`
NCBI Name	`LOC131020762`
原始查询	`SmilChr04G003903`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycosyl transferase family 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828040]; symbol=AT4G01210; hit=AT4G01210; species=arabidopsis; confidence=high
产物	glycosyl transferase family 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828040]; symbol=AT4G01210; hit=AT4G01210; species=arabidopsis; confidence=high
Arabidopsis	`AT4G01210` (AT4G01210) glycosyl transferase family 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828040] identity=53.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os10g0546200` - identity=32.4; qcov=0.465; evalue=3.93e-67; confidence=low
GO	GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF00534 (Glycos_transf_1); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:131020762

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057805753.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057805753.1`
3	Nucleus	细胞核	0.00000	`XP_057805753.1`
4	Chromosome	染色体	0.00000	`XP_057805753.1`
5	Centromere	着丝粒	0.00000	`XP_057805753.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54802562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:54802914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:54803587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr4:54803610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:54803656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr4:54804621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B25,B85,C57
`Chr4:54805181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B78,D10,D4
`Chr4:54805599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B74,C63,C70
`Chr4:54805968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B101,B78,D10,D4
`Chr4:54805977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr4:54806031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B81
`Chr4:54806038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805753.1

1024 aa

512

1024

Glycos_transf_1

Glyco_trans_1_4

PF00534 Glycos_transf_1 392-495 aa PF13692 Glyco_trans_1_4 402-485 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805753.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	392	495	2.6e-10	40.8	Glycosyl transferases group 1
`XP_057805753.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	402	485	2e-10	41.8	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949770.1
GAAAATAAAAATAAAGAAATAAAAAAGAAAGACTCACTAGCTAGCTAATGTCTACTTGAATTCTTGAGAGAGAAGAGAAGAAAAAGGCGAAAAAAAAGGGAAAATAAAATAGGCAGTCTATAATTCCAATTCAGTCAAATATAAAATTGCAGTAACCCCATCATTTTCATCATCCCAAAACGCTGTTTCTTTTCCGTTTGTTTGTTTTTTTTGCATATTTTTGGGGGTGAATTCCGATATTCTTGAAAACGAGTATGTAG...

CDS

1 records

下载 CDS FASTA

LOC131020762
ATGGGTTCACTTGAAACTGGGCTGGCATTGAAGAGGGATCATAATTTGCAGCGCTCTTCATCTGTCAGGAGCTCTAGCAGCAGTAATAGCATTGGATTATCGGGGCAAAGAAGCAGATCAAGATTTGCGAGAGCTGTCCTTTTCAAGAAGATTGATTACCTGCAGTTGATTAGTGCGGTTGCTGTTTTCTTCTTCTTCGTCTTCTTCTTCCAGATTTTCTTCTTGCCGGGCTCGGTGATTGAAGATGGGAATAAATCTGG...

Protein

1 records

下载 Protein FASTA

XP_057805753.1
MGSLETGLALKRDHNLQRSSSVRSSSSSNSIGLSGQRSRSRFARAVLFKKIDYLQLISAVAVFFFFVFFFQIFFLPGSVIEDGNKSGKAHDLFGVVNSEDLSFLKELDFGEDLDFEPMRIVEKFRREGGVASEGKFVRFGYRKPKIALVFADLWVDQHQILMATVATALLEIGYEIEVFTLENGPAHAIWRNLSVTVNAADKDMKFAVDWLNYNAVLVNSLNAAGFLSCLMQEPFKTVPVVWTIHEQTLADRLRQYVSNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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