Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003913`

染色体: Chr04 坐标: 54855883-54859870 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003913`
名称	SmilChr04G003913
描述	common plant regulatory factor 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54855883 - 54859870 / `+`

ID 对照

NCBI Gene ID	`LOC131020775`
GeneID	`131020775`
locus_tag	`-`
NCBI Name	`LOC131020775`
原始查询	`SmilChr04G003913`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	common plant regulatory factor 1-like
产物	common plant regulatory factor 1-like
Arabidopsis	`AT2G46270` (GBF3) G-box binding factor 3 [Source:NCBI gene (formerly Entrezgene);Acc:819235] identity=41.7; qcov=1.07; evalue=9.64e-76; confidence=medium
Rice	`Os05g0569300` (OsbZIP45) - identity=34.7; qcov=0.992; evalue=1.26e-47; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2); PF07777 (MFMR)
InterPro	-
eggNOG	-
NR	GeneID:131020775

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805769.1`
2	Chromosome	染色体	0.00000	`XP_057805769.1`
3	Centromere	着丝粒	0.00000	`XP_057805769.1`
4	Chromatin	染色质	0.00000	`XP_057805769.1`
5	Telomere	端粒	0.00000	`XP_057805769.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54856980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,B73,C42
`Chr4:54857016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr4:54857801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr4:54857875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr4:54857878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B89,C6
`Chr4:54857880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr4:54857887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr4:54858082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr4:54858599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr4:54858600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:54858667`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr4:54858673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805769.1

396 aa

198

396

MFMR

bZIP_1

bZIP_2

PF07777 MFMR 1-95 aa PF00170 bZIP_1 263-324 aa PF07716 bZIP_2 264-311 aa

XP_057805770.1

396 aa

198

396

MFMR

bZIP_1

bZIP_2

PF07777 MFMR 1-95 aa PF00170 bZIP_1 263-324 aa PF07716 bZIP_2 264-311 aa

XP_057805771.1

396 aa

198

396

MFMR

bZIP_1

bZIP_2

PF07777 MFMR 1-95 aa PF00170 bZIP_1 263-324 aa PF07716 bZIP_2 264-311 aa

XP_057805772.1

395 aa

198

395

MFMR

bZIP_1

bZIP_2

PF07777 MFMR 1-95 aa PF00170 bZIP_1 262-323 aa PF07716 bZIP_2 263-310 aa

XP_057805773.1

395 aa

198

395

MFMR

bZIP_1

bZIP_2

PF07777 MFMR 1-95 aa PF00170 bZIP_1 262-323 aa PF07716 bZIP_2 263-310 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805769.1`	Pfam	`PF07777`	MFMR	Family	1	95	5.1e-24	85.3	G-box binding protein MFMR
`XP_057805769.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	263	324	5.2e-19	68.8	bZIP transcription factor
`XP_057805769.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	264	311	6.2e-10	39.7	Basic region leucine zipper
`XP_057805770.1`	Pfam	`PF07777`	MFMR	Family	1	95	5.1e-24	85.3	G-box binding protein MFMR
`XP_057805770.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	263	324	5.2e-19	68.8	bZIP transcription factor
`XP_057805770.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	264	311	6.2e-10	39.7	Basic region leucine zipper
`XP_057805771.1`	Pfam	`PF07777`	MFMR	Family	1	95	5.1e-24	85.3	G-box binding protein MFMR
`XP_057805771.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	263	324	5.2e-19	68.8	bZIP transcription factor
`XP_057805771.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	264	311	6.2e-10	39.7	Basic region leucine zipper
`XP_057805772.1`	Pfam	`PF07777`	MFMR	Family	1	95	5e-24	85.4	G-box binding protein MFMR
`XP_057805772.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	262	323	5.2e-19	68.8	bZIP transcription factor
`XP_057805772.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	263	310	6.2e-10	39.7	Basic region leucine zipper
`XP_057805773.1`	Pfam	`PF07777`	MFMR	Family	1	95	5e-24	85.4	G-box binding protein MFMR
`XP_057805773.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	262	323	5.2e-19	68.8	bZIP transcription factor
`XP_057805773.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	263	310	6.2e-10	39.7	Basic region leucine zipper

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057949787.1
GCCTTTGGCGCTCAAATCCTTCTTATTCTTCTTCTTCTTTCCCCCAAACTTTCTCTCACTAAAACCTCCCCTCACTGCAACCTCCTCTCACCCATCCATCCACCCACTCTCTATGTTCAGACAGAGGAATGCAGTTTAGAGCCTTCAGCTTTGTTCAATAGATTTCTCCTTTTCTCTATACCGTCCTAAAATTTTCCGAGGTTTTCACTTGCTTGAACATTGAATTTCATACTGACTTTGTTTCAAATTAAAAAGGTGTT...

XM_057949790.1
GCCTTTGGCGCTCAAATCCTTCTTATTCTTCTTCTTCTTTCCCCCAAACTTTCTCTCACTAAAACCTCCCCTCACTGCAACCTCCTCTCACCCATCCATCCACCCACTCTCTATGTTCAGACAGAGGAATGCAGTTTAGAGCCTTCAGCTTTGTTCAATAGATTTCTCCTTTTCTCTATACCGTCCTAAAATTTTCCGAGGTTTTCACTTGCTTGAACATTGAATTTCATACTGACTTTGTTTCAAATTAAAAAGGTGTT...

CDS

5 records

下载 CDS FASTA

LOC131020775
ATGGGAAATAGTGAAGAAGGGAAGCCTTGTAAAATTGAAGTTGAACAACCATCGTCACCAGCGAACGACCAGGGTGCTGCTCCTGTGTATCCCGACTGGGCGATGATGCAAGCTTACTATGGTCCCCAATTCGCTGTGCCACCATATCTTAACTCAGCTGTTGCTTCTCCTCATATCCCTACACCTTATATGTGGATGGTGCCTCCACAGTATATGGTACCTCCTTATGGGGCTTCATACCCAGGATACTATTCTCATGA...

Protein

5 records

下载 Protein FASTA

XP_057805769.1
MGNSEEGKPCKIEVEQPSSPANDQGAAPVYPDWAMMQAYYGPQFAVPPYLNSAVASPHIPTPYMWMVPPQYMVPPYGASYPGYYSHEGAYGHPGVSTAGTSFSMATPAESSGNTDGGIVKKKSKDSQGLAVPIENGNADGGGHGPDRRLSESEVTDDSSDGTNEVTAEAGQSGVKRSRAGSPKSAAKGDKDQKKGSADVGRGYGSTEETSHPAYTPAKAKENASTVPELKGSSILDVKPVAACNPQSSIIANEAQLQGTP...

XP_057805770.1
MGNSEEGKPCKIEVEQPSSPANDQGAAPVYPDWAMMQAYYGPQFAVPPYLNSAVASPHIPTPYMWMVPPQYMVPPYGASYPGYYSHEGAYGHPGVSTAGTSFSMATPAESSGNTDGGIVKKKSKDSQGLAVPIENGNADGGGHGPDRRLSESEVTDDSSDGTNEVTAEAGQSGVKRSRAGSPKSAAKGDKDQKKGSADVGRGYGSTEETSHPAYTPAKAKENASTVPELKGSSILDVKPVAACNPQSSIIANEAQLQGTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器