Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003918`

染色体: Chr04 坐标: 54876564-54879780 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003918`
名称	SmilChr04G003918
描述	mitochondrial carrier protein MTM1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54876564 - 54879780 / `+`

ID 对照

NCBI Gene ID	`LOC131020780`
GeneID	`131020780`
locus_tag	`-`
NCBI Name	`LOC131020780`
原始查询	`SmilChr04G003918`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial carrier protein MTM1-like
产物	mitochondrial carrier protein MTM1-like
Arabidopsis	`AT4G27940` (MTM1) manganese tracking factor for mitochondrial SOD2 [Source:NCBI gene (formerly Entrezgene);Acc:828907] identity=61.2; qcov=1.01; evalue=8.8e-136; confidence=high
Rice	`Os08g0386800` (P0434E03.16-1) - identity=64; qcov=0.991; evalue=3.18e-144; confidence=high
GO	GO:1990542 (mitochondrial transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131020780

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057805781.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057805781.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057805781.1`
4	Nucleus	细胞核	0.00000	`XP_057805781.1`
5	Chromosome	染色体	0.00000	`XP_057805781.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54876841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C45,C67,D5
`Chr4:54876949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B28,C31,C44,C6
`Chr4:54876974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B111,C8,C85
`Chr4:54877044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:54877669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:54879106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B119,C3,C86
`Chr4:54879357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B127
`Chr4:54879365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,C3,C86,D9
`Chr4:54879369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805781.1

391 aa

196

391

Mito_carr

PF00153 Mito_carr 49-171 aa PF00153 Mito_carr 183-283 aa PF00153 Mito_carr 297-383 aa

XP_057805782.1

317 aa

158

317

Mito_carr

PF00153 Mito_carr 47-97 aa PF00153 Mito_carr 109-209 aa PF00153 Mito_carr 223-309 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805781.1`	Pfam	`PF00153`	Mito_carr	Repeat	49	171	3e-52	175.0	Mitochondrial carrier protein
`XP_057805781.1`	Pfam	`PF00153`	Mito_carr	Repeat	183	283	3e-52	175.0	Mitochondrial carrier protein
`XP_057805781.1`	Pfam	`PF00153`	Mito_carr	Repeat	297	383	3e-52	175.0	Mitochondrial carrier protein
`XP_057805782.1`	Pfam	`PF00153`	Mito_carr	Repeat	47	97	4.1e-43	145.7	Mitochondrial carrier protein
`XP_057805782.1`	Pfam	`PF00153`	Mito_carr	Repeat	109	209	4.1e-43	145.7	Mitochondrial carrier protein
`XP_057805782.1`	Pfam	`PF00153`	Mito_carr	Repeat	223	309	4.1e-43	145.7	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949798.1
AAAATAGTCTCAATTAATCGGCGAGTGGGCTTTCCTCTCCGAGTTTTTGGCGCCCTCATTTCGACGCCATCAATGACGCACGTATTCTATTTCCCCACCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTTCCTAAAATTCAATTGAAATCAAATAACCCTCGTCATCACTAATTAGGAAAAGCAGCTAGCTACTTCCTTAATTTCTTGATCCTTTTAAATCTTTCCCAAATTATTGGAAGTTTCCGGTCACACAATTT...

XM_057949799.1
AAAATAGTCTCAATTAATCGGCGAGTGGGCTTTCCTCTCCGAGTTTTTGGCGCCCTCATTTCGACGCCATCAATGACGCACGTATTCTATTTCCCCACCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTTCCTAAAATTCAATTGAAATCAAATAACCCTCGTCATCACTAATTAGGAAAAGCAGCTAGCTACTTCCTTAATTTCTTGATCCTTTTAAATCTTTCCCAAATTATTGGAAGTTTCCGGTCACACAATTT...

CDS

2 records

下载 CDS FASTA

LOC131020780
ATGGTGGGCTCGCCGAGACAAGGCCTGCCTTCATGGATAGGAATGGCAACGGCTACAAGAAAGGTGGAATTAGATAAAAACATGCCCAAAGAGGAGTCCTTCGCGCGGGAGCCGTCGAGGAATTCCAATATTTCTGACGTGGATTTGAGTTTTGGGGAAAGGGCATTAGCCGGCGCCGGCGCCGCCGTCATTTCCACCGCCATCGTCAACCCTCTCGATGTTGCTAAGACAAGGCTGCAAGCTCAAGCAGCTGGAGTTCC...

LOC131020780
ATGTTGCTAAGGCTGCAAGCTCAAGCAGCTGGAGTTCCGTATGGTGGATTATGTGAGACGGAATGCTCTGCAAACACGATGCTGCAAGACAGGAGGTTTGTGCCATCAGGCACTCAACCAAAGTGCACTCCAGATTGCACGCGCTATAGAGGGACATTGGATGTATTATACAAAGTGATTCGGCAGGAAGGATTCTCAAGATTGTGGAGAGGAACTAATGCTAGTCTAGCATTGGCGATTCCCTCAGTGGGAATCTATAT...

Protein

2 records

下载 Protein FASTA

XP_057805781.1
MVGSPRQGLPSWIGMATATRKVELDKNMPKEESFAREPSRNSNISDVDLSFGERALAGAGAAVISTAIVNPLDVAKTRLQAQAAGVPYGGLCETECSANTMLQDRRFVPSGTQPKCTPDCTRYRGTLDVLYKVIRQEGFSRLWRGTNASLALAIPSVGIYMPLYDILRNHMEELASHNAPTMTPYVPLLAGSLARSVACVTCYPIELARTRMQAFKHMQADVKPPGVWKTLTGAVSPFRTANSRQAFQSYRILWTGLSVQ...

XP_057805782.1
MLLRLQAQAAGVPYGGLCETECSANTMLQDRRFVPSGTQPKCTPDCTRYRGTLDVLYKVIRQEGFSRLWRGTNASLALAIPSVGIYMPLYDILRNHMEELASHNAPTMTPYVPLLAGSLARSVACVTCYPIELARTRMQAFKHMQADVKPPGVWKTLTGAVSPFRTANSRQAFQSYRILWTGLSVQLARDVPFSAVCWSSLEPLRRKFLSSIGEEASASCVLGANFGAGFVAGSLAAAATSPLDVARTRQQIEKDPTRVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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