Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003925`

染色体: Chr04 坐标: 54921534-54929123 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003925`
名称	SmilChr04G003925
描述	uncharacterized SmilChr04G003925
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54921534 - 54929123 / `-`

ID 对照

NCBI Gene ID	`LOC131020788`
GeneID	`131020788`
locus_tag	`-`
NCBI Name	`LOC131020788`
原始查询	`SmilChr04G003925`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837105]; symbol=AT1G05950; hit=AT1G05950; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837105]; symbol=AT1G05950; hit=AT1G05950; species=arabidopsis; confidence=low
Arabidopsis	`AT1G05950` (AT1G05950) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837105] identity=34.9; qcov=0.362; evalue=2.21e-55; confidence=low
Rice	`Os09g0514500` (ald) - identity=42.5; qcov=0.177; evalue=4.4e-29; confidence=weak
GO	-
KEGG	-
Pfam	PF25500 (DUF7913); PF25502 (DUF7915)
InterPro	-
eggNOG	-
NR	GeneID:131020788

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805793.1`
2	Chromosome	染色体	0.00000	`XP_057805793.1`
3	Centromere	着丝粒	0.00000	`XP_057805793.1`
4	Chromatin	染色质	0.00000	`XP_057805793.1`
5	Telomere	端粒	0.00000	`XP_057805793.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54921940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr4:54922192`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D8
`Chr4:54922192`	`AT`	`A`	1bp_deletion	CDS_variant	1	D8
`Chr4:54922220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,C44,C6
`Chr4:54923550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,C29,C45,D5
`Chr4:54924452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,B62,C83
`Chr4:54924598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,C29,C45,D5
`Chr4:54924745`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C79
`Chr4:54924745`	`CG`	`C`	1bp_deletion	CDS_variant	1	C79
`Chr4:54924939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:54925907`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B89
`Chr4:54925954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,A6,B67,C52,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805793.1

982 aa

491

982

DUF7913

DUF7915

PF25500 DUF7913 18-135 aa PF25502 DUF7915 171-313 aa

XP_057805794.1

982 aa

491

982

DUF7913

DUF7915

PF25500 DUF7913 18-135 aa PF25502 DUF7915 171-313 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805793.1`	Pfam	`PF25500`	DUF7913	Domain	18	135	4.2e-48	163.1	Domain of unknown function (DUF7913)
`XP_057805793.1`	Pfam	`PF25502`	DUF7915	Domain	171	313	1.2e-39	136.4	Domain of unknown function (DUF7915)
`XP_057805794.1`	Pfam	`PF25500`	DUF7913	Domain	18	135	4.2e-48	163.1	Domain of unknown function (DUF7913)
`XP_057805794.1`	Pfam	`PF25502`	DUF7915	Domain	171	313	1.2e-39	136.4	Domain of unknown function (DUF7915)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949810.1
TTAAAATAAAGCATTAATTGGAAATTGGACGCTTTTATAAGTTAGATCAGTTTCCGAAGCAGAAGTAAAATATTGATGTTTATTTTACTTTTTAAGGAAAAGCTGAAAAAGGATTCCTTTGATTCTCAAGAACACACACACACACACACACACAGCCCTAGTCACCTAAAAATCTTCTCACTTTCAAAATCTCTCCGCATTCCTCCAAGAGAGACGAAGCAAGTCTGTAAATCGGCGTTTGTGTTTGAAGTTTACTGGCC...

XM_057949811.1
TTAAAATAAAGCATTAATTGGAAATTGGACGCTTTTATAAGTTAGATCAGTTTCCGAAGCAGAAGTAAAATATTGATGTTTATTTTACTTTTTAAGGAAAAGCTGAAAAAGGATTCCTTTGATTCTCAAGAACACACACACACACACACACACAGCCCTAGTCACCTAAAAATCTTCTCACTTTCAAAATCTCTCCGCATTCCTCCAAGAGAGACGAAGCAAGTCTGTAAATCGGCGTTTGTGTTTGAAGTTTACTGGCC...

CDS

2 records

下载 CDS FASTA

LOC131020788
ATGGCGTCGGGATCAGAATCAGCTGCGGAAAAGGTGGGGCCAGGATGGGCGGTGAGCCCTACTGAAGATTTGGTGCAAGCTTTGATGGAGACTTTAGTTGATCCTCTTTTGCCCTTGAGACTCTCTAACGTGCCTCCCTCAGAAGATGTCCAGATAGCTGTTGCCAAACAGATGCATGCAGTTGTTTTGCTCTACAATTACCACCACAGGAAGCAGAAACCAGATCTAGTATTCCTAGAATTTGCGAATTTCTGCAAGTT...

Protein

2 records

下载 Protein FASTA

XP_057805793.1
MASGSESAAEKVGPGWAVSPTEDLVQALMETLVDPLLPLRLSNVPPSEDVQIAVAKQMHAVVLLYNYHHRKQKPDLVFLEFANFCKLAIVIRPPLIAFMKMMKESKLQELDGTEERLSVTEKAIKDACDIALGLDASRDVPNMEGWPISKLVVLLIDSKKENCMLQAGAVTEGALSLIVKELNQSSIPSEISAGNKVGSKRKRDNLSTYNTEFLQLGYDVVKDVTGISISELEVLETHMTYSLTKEKSAAWFYIMQCSGS...

XP_057805794.1
MASGSESAAEKVGPGWAVSPTEDLVQALMETLVDPLLPLRLSNVPPSEDVQIAVAKQMHAVVLLYNYHHRKQKPDLVFLEFANFCKLAIVIRPPLIAFMKMMKESKLQELDGTEERLSVTEKAIKDACDIALGLDASRDVPNMEGWPISKLVVLLIDSKKENCMLQAGAVTEGALSLIVKELNQSSIPSEISAGNKVGSKRKRDNLSTYNTEFLQLGYDVVKDVTGISISELEVLETHMTYSLTKEKSAAWFYIMQCSGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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