Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003930`

染色体: Chr04 坐标: 54954381-54958080 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003930`
名称	SmilChr04G003930
描述	histone H3-like centromeric protein CENH3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54954381 - 54958080 / `-`

ID 对照

NCBI Gene ID	`LOC131020793`
GeneID	`131020793`
locus_tag	`-`
NCBI Name	`LOC131020793`
原始查询	`SmilChr04G003930`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone H3-like centromeric protein CENH3
产物	histone H3-like centromeric protein CENH3
Arabidopsis	`AT1G01370` (HTR12) Histone superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839104] identity=59.7; qcov=0.899; evalue=1.04e-51; confidence=high
Rice	`Os03g0390600` (H3) - identity=56.5; qcov=0.973; evalue=2.26e-42; confidence=medium
GO	GO:0000786 (nucleosome); GO:0003677 (DNA binding); GO:0030527 (structural constituent of chromatin); GO:0046982 (protein heterodimerization activity)
KEGG	-
Pfam	PF00125 (Histone)
InterPro	-
eggNOG	-
NR	GeneID:131020793

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805797.1`
2	Chromosome	染色体	1.00000	`XP_057805797.1`
3	Centromere	着丝粒	0.60000	`XP_057805797.1`
4	Nucleoplasm	核质	0.40000	`XP_057805799.1`
5	Chromatin	染色质	0.00000	`XP_057805797.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54954994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805797.1

157 aa

157

Histone

PF00125 Histone 62-150 aa

XP_057805798.1

150 aa

150

Histone

PF00125 Histone 55-143 aa

XP_057805799.1

149 aa

149

Histone

PF00125 Histone 54-142 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805797.1`	Pfam	`PF00125`	Histone	Domain	62	150	1.5e-29	102.9	Core histone H2A/H2B/H3/H4 domain
`XP_057805798.1`	Pfam	`PF00125`	Histone	Domain	55	143	1.4e-29	103.0	Core histone H2A/H2B/H3/H4 domain
`XP_057805799.1`	Pfam	`PF00125`	Histone	Domain	54	142	1.4e-29	103.0	Core histone H2A/H2B/H3/H4 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949814.1
CGCCTTGATTATATATTTAAAACAAAATAGCAAAACTCAAATATGAAGCGAAGCGGGAAAACAATTTATGTAGAAAAAAAAATTATCAGTGCCAAATTCTTGATGAAAAATATTAATGGCGAGAGTCAAACAGAGCGCCAAGAAATCCACGAGCCGGAAATTCTCCCAAGCAACTCCGTCAACTTCAACTCCACAGGTACGGCGTAATCTGTTTAATCAGTCTGCTGCGAGAAGAAGCCCTCGGACTGGCACACCATCTA...

XM_057949815.1
CCTTGATTATATATTTAAAACAAAATAGCAAAACTCAAATATGAAGCGAAGCGGGAAAACAATTTATGTAGAAAAAAAAATTATCAGTGCCAAATTCTTGATGAAAAATATTAATGGCGAGAGTCAAACAGAGCGCCAAGAAATCCACGAGCCGGAAATTCTCCCAAGCAACTCCGTCAACTTCAACTCCACAGCAGTCTGCTGCGAGAAGAAGCCCTCGGACTGGCACACCATCTAGGACTGAGGCAGGAGCAAAGAAA...

CDS

3 records

下载 CDS FASTA

LOC131020793
ATGGCGAGAGTCAAACAGAGCGCCAAGAAATCCACGAGCCGGAAATTCTCCCAAGCAACTCCGTCAACTTCAACTCCACAGTCTGCTGCGAGAAGAAGCCCTCGGACTGGCACACCATCTAGGACTGAGGCAGGAGCAAAGAAAAAGCGCCGGAACCGGCCGGGGACGGTGGCTTTACGTGAGATAAGGAAATATCAAAAGTCTTGGAATCTTTTGATCCCTGCTGCTCCATTCATTCGAACTGTAAAAGAGATCAGTTT...

LOC131020793
ATGGCGAGAGTCAAACAGAGCGCCAAGAAATCCACGAGCCGGAAATTCTCCCAAGCAACTCCGTCAACTTCAACTCCACAGCAGTCTGCTGCGAGAAGAAGCCCTCGGACTGGCACACCATCTAGGACTGAGGCAGGAGCAAAGAAAAAGCGCCGGAACCGGCCGGGGACGGTGGCTTTACGTGAGATAAGGAAATATCAAAAGTCTTGGAATCTTTTGATCCCTGCTGCTCCATTCATTCGAACTGTAAAAGAGATCAG...

Protein

3 records

下载 Protein FASTA

XP_057805797.1
MARVKQSAKKSTSRKFSQATPSTSTPQVRRNLFNQSAARRSPRTGTPSRTEAGAKKKRRNRPGTVALREIRKYQKSWNLLIPAAPFIRTVKEISFQFAPSVGRWQAEALVALQEAAEDYIVKLFEEAMLCAIHAKRVTLMKKDFELARRIGGIGRPW

XP_057805798.1
MARVKQSAKKSTSRKFSQATPSTSTPQQSAARRSPRTGTPSRTEAGAKKKRRNRPGTVALREIRKYQKSWNLLIPAAPFIRTVKEISFQFAPSVGRWQAEALVALQEAAEDYIVKLFEEAMLCAIHAKRVTLMKKDFELARRIGGIGRPW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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