Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003937`

染色体: Chr04 坐标: 54995009-54998521 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003937`
名称	SmilChr04G003937
描述	cyclic nucleotide-gated ion channel 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54995009 - 54998521 / `+`

ID 对照

NCBI Gene ID	`LOC131020801`
GeneID	`131020801`
locus_tag	`-`
NCBI Name	`LOC131020801`
原始查询	`SmilChr04G003937`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclic nucleotide-gated ion channel 1-like
产物	cyclic nucleotide-gated ion channel 1-like
Arabidopsis	`AT1G01340` (CNGC10) cyclic nucleotide gated channel 10 [Source:NCBI gene (formerly Entrezgene);Acc:838832] identity=47.1; qcov=1.01; evalue=8.7e-177; confidence=high
Rice	`Os06g0527100` (OsCNGC12) - identity=43.5; qcov=0.984; evalue=3.36e-162; confidence=medium
GO	GO:0005216 (monoatomic ion channel activity); GO:0006811 (monoatomic ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00520 (Ion_trans)
InterPro	-
eggNOG	-
NR	GeneID:131020801

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057805806.1`
2	Nucleus	细胞核	0.00000	`XP_057805806.1`
3	Chromosome	染色体	0.00000	`XP_057805806.1`
4	Centromere	着丝粒	0.00000	`XP_057805806.1`
5	Chromatin	染色质	0.00000	`XP_057805806.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54995162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B54,B85
`Chr4:54995194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr4:54995215`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B3,B69
`Chr4:54995215`	`AT`	`A`	1bp_deletion	CDS_variant	2	B3,B69
`Chr4:54996359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C6,D9
`Chr4:54996426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B3,B69,B94,D11
`Chr4:54996442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B82
`Chr4:54996447`	`GT`	`G`	1bp_deletion	frameshift_variant	2	B3,B69
`Chr4:54996447`	`GT`	`G`	1bp_deletion	CDS_variant	2	B3,B69
`Chr4:54996494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr4:54996517`	`C`	`CT`	1bp_insertion	frameshift_variant	20	B109,B120,B123,B127,B137,B29,B42,B43,B45,B56,B58,B83,B96,C11,C52,C69,D1,D3,D5,D9
`Chr4:54996711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805806.1

605 aa

302

605

Ion_trans

PF00520 Ion_trans 52-325 aa

XP_057805807.1

591 aa

296

591

Ion_trans

PF00520 Ion_trans 52-311 aa

XP_057805809.1

578 aa

289

578

Ion_trans

PF00520 Ion_trans 52-325 aa

XP_057805810.1

575 aa

288

575

Ion_trans

PF00520 Ion_trans 52-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805806.1`	Pfam	`PF00520`	Ion_trans	Family	52	325	9e-13	48.7	Ion transport protein
`XP_057805807.1`	Pfam	`PF00520`	Ion_trans	Family	52	311	1.9e-09	37.8	Ion transport protein
`XP_057805809.1`	Pfam	`PF00520`	Ion_trans	Family	52	325	8.1e-13	48.8	Ion transport protein
`XP_057805810.1`	Pfam	`PF00520`	Ion_trans	Family	52	325	8e-13	48.8	Ion transport protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057949823.1
CTCTCCTTCTCTCTGTTTCTCTCTCTTGCTGATTGTGATCTGTATTTTGCTGAGGATGAAGAGCTGGAGAAGAAACAGGCTTGACCGTAGTCTTCTCAAGTGGAATAAAATGCTGCTAATCTCTTGCATAACTGCGTTATGCATTGATCCTCTCGTCTGCTACATTTCCGTTGTCGACGCCGACAGATTGTGCCTCGATGTGGATAATCGATTAGCCGTCGCCTTCGGTTTTCTTCGCACACTCGTCGACTTCTTCTACG...

XM_057949826.1
CTCTCCTTCTCTCTGTTTCTCTCTCTTGCTGATTGTGATCTGTATTTTGCTGAGGATGAAGAGCTGGAGAAGAAACAGGCTTGACCGTAGTCTTCTCAAGTGGAATAAAATGCTGCTAATCTCTTGCATAACTGCGTTATGCATTGATCCTCTCGTCTGCTACATTTCCGTTGTCGACGCCGACAGATTGTGCCTCGATGTGGATAATCGATTAGCCGTCGCCTTCGGTTTTCTTCGCACACTCGTCGACTTCTTCTACG...

CDS

4 records

下载 CDS FASTA

LOC131020801
ATGAAGAGCTGGAGAAGAAACAGGCTTGACCGTAGTCTTCTCAAGTGGAATAAAATGCTGCTAATCTCTTGCATAACTGCGTTATGCATTGATCCTCTCGTCTGCTACATTTCCGTTGTCGACGCCGACAGATTGTGCCTCGATGTGGATAATCGATTAGCCGTCGCCTTCGGTTTTCTTCGCACACTCGTCGACTTCTTCTACGTCGTGCACATTTTCATGCAGTTCGTATTTGCTGCAGCTGATGAAGCTCTTGTTAG...

Protein

4 records

下载 Protein FASTA

XP_057805806.1
MKSWRRNRLDRSLLKWNKMLLISCITALCIDPLVCYISVVDADRLCLDVDNRLAVAFGFLRTLVDFFYVVHIFMQFVFAAADEALVRDFRSINVKRNQRCYFIMDVVSILPLPQAKIVIVLHSEISPLRLRTLMILTMFQNLLRIWRMVPLYKKLTATSSIFVSRAWIGAASDIISCILASHMFGSFWYLMSVERTEECWRMACRINPQQCNPDALYCGRGRQQSDVYNSFLVSSCSPHEPSKSDFGYGIFAHAVSIQLY...

XP_057805807.1
MKSWRRNRLDRSLLKWNKMLLISCITALCIDPLVCYISVVDADRLCLDVDNRLAVAFGFLRTLVDFFYVVHIFMQFVFAAADEALVRDFRSINVKRNQRCYFIMDVVSILPLPQAKIVIVLHSEISPLRLRTLMILTMFQNLLRIWRMVPLYKKLTATSSIFVSRAWIGAASDIISCILASHMFGSFWYLMSVERTEECWRMACRINPQQCNPDALYCGRGRQQSDVYNSFLVSSCSPHEPSKSDFGYGIFAHALNIEIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器