Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003939`

染色体: Chr04 坐标: 55010158-55011910 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003939`
名称	SmilChr04G003939
描述	putative RING-H2 finger protein ATL21A
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55010158 - 55011910 / `-`

ID 对照

NCBI Gene ID	`LOC131020803`
GeneID	`131020803`
locus_tag	`-`
NCBI Name	`LOC131020803`
原始查询	`SmilChr04G003939`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative RING-H2 finger protein ATL21A
产物	putative RING-H2 finger protein ATL21A
Arabidopsis	`AT2G46495` (AT2G46495) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819259] identity=32.2; qcov=0.986; evalue=1.29e-35; confidence=low
Rice	`Os12g0140700` - identity=45.2; qcov=0.177; evalue=3.99e-11; confidence=weak
GO	GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF13947 (GUB_WAK_bind); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131020803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057805814.1`
2	Nucleus	细胞核	0.00000	`XP_057805814.1`
3	Chromosome	染色体	0.00000	`XP_057805814.1`
4	Centromere	着丝粒	0.00000	`XP_057805814.1`
5	Chromatin	染色质	0.00000	`XP_057805814.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55010308`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A11
`Chr4:55010308`	`TG`	`T`	1bp_deletion	CDS_variant	1	A11
`Chr4:55010453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B123,B29,D9
`Chr4:55010472`	`T`	`TG`	1bp_insertion	frameshift_variant	32	A1,A14,A8,B105,B110,B119,B121,B132,B15,B19,B28,B3,B4,B40,B46,B76,B97,C12,C33,C4,C40,C46,C47,C59,C7,C73,C75,C81,C9,D5,D7,D9
`Chr4:55010535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr4:55010585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr4:55010628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr4:55010652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B19,B26,B5,C82
`Chr4:55011368`	`CAT`	`C`	2bp_deletion	frameshift_variant	1	C53
`Chr4:55011368`	`CAT`	`C`	2bp_deletion	CDS_variant	1	C53
`Chr4:55011434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr4:55011549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B32,B7,B82,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805814.1

350 aa

175

350

GUB_WAK_bind

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF13947 GUB_WAK_bind 23-91 aa PF17123 zf-RING_11 302-330 aa PF13445 zf-RING_UBOX 302-341 aa PF00097 zf-C3HC4 302-343 aa PF13923 zf-C3HC4_2 302-343 aa PF13639 zf-RING_2 302-344 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805814.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	23	91	2.7e-09	38.0	Wall-associated receptor kinase galacturonan-binding
`XP_057805814.1`	Pfam	`PF17123`	zf-RING_11	Domain	302	330	1.7e-06	28.3	RING-like zinc finger
`XP_057805814.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	302	341	5.5e-06	27.0	RING-type zinc-finger
`XP_057805814.1`	Pfam	`PF00097`	zf-C3HC4	Domain	302	343	5.8e-06	26.8	Zinc finger, C3HC4 type (RING finger)
`XP_057805814.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	302	343	1.5e-07	31.8	Zinc finger, C3HC4 type (RING finger)
`XP_057805814.1`	Pfam	`PF13639`	zf-RING_2	Domain	302	344	2.5e-12	47.6	Ring finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949831.1
ACATGAGCTTTCTTTTCTTTTTTTTTGGGAGGAAAAACATGAGATCAATTCTTGAATTATGTTAAATCTCATTTGAAGGTAAAAAAAAAAACATGAGAATAATTCTCGGCATTTCATTCGTCTTCCTCACAACCTCGTCTTCATCAATCATCCACGCCTGTCCGAATTCAAACTGCGGCGACTTGTTCATCACTTATCCTTTCAAACTGCAGAGCTCGCAAACTGCAGAAGACGGCTGCAGCTACGTCGATCTGCGATGC...

CDS

1 records

下载 CDS FASTA

LOC131020803
ATGAGAATAATTCTCGGCATTTCATTCGTCTTCCTCACAACCTCGTCTTCATCAATCATCCACGCCTGTCCGAATTCAAACTGCGGCGACTTGTTCATCACTTATCCTTTCAAACTGCAGAGCTCGCAAACTGCAGAAGACGGCTGCAGCTACGTCGATCTGCGATGCAACGGCGCCCCCGATTTTGCAACCGCGATGAATCTCCCCAACGGCGGCGGAGATCTCTACGTGCGTAACATCTCCTACGAGTATCCATACAT...

Protein

1 records

下载 Protein FASTA

XP_057805814.1
MRIILGISFVFLTTSSSSIIHACPNSNCGDLFITYPFKLQSSQTAEDGCSYVDLRCNGAPDFATAMNLPNGGGDLYVRNISYEYPYIQLYDPGNCLVGRLIGLNISLSLASSPLEAFAGAKYALYTCPAAAVDVARDGLYRIDCLSNTTNVTVAVDFPPLLGLEGVGCQEIGNYVLPFTSDGFYDDLYLTWDSTSCPACANTDDNNSWDGFSGLPYFSSIFVVIVVMLTASSFLITRKIVGRLSPNAVANGLPVAAPPPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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