Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003943`

染色体: Chr04 坐标: 55029932-55031462 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003943`
名称	SmilChr04G003943
描述	RING-H2 finger protein ATL22-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55029932 - 55031462 / `-`

ID 对照

NCBI Gene ID	`LOC131023641`
GeneID	`131023641`
locus_tag	`-`
NCBI Name	`LOC131023641`
原始查询	`SmilChr04G003943`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING-H2 finger protein ATL22-like
产物	RING-H2 finger protein ATL22-like
Arabidopsis	`AT5G53110` (AT5G53110) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835391] identity=29.8; qcov=1.03; evalue=5.94e-31; confidence=low
Rice	`Os02g0676500` (OsRFPH2-2) - identity=51.9; qcov=0.158; evalue=7.84e-13; confidence=weak
GO	GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF13947 (GUB_WAK_bind); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131023641

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057809170.1`
2	Nucleus	细胞核	0.00000	`XP_057809170.1`
3	Chromosome	染色体	0.00000	`XP_057809170.1`
4	Centromere	着丝粒	0.00000	`XP_057809170.1`
5	Chromatin	染色质	0.00000	`XP_057809170.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55029940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B85
`Chr4:55029977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:55029987`	`AG`	`A`	1bp_deletion	frameshift_variant	8	A2,B129,B54,B66,B89,C13,C62,C80
`Chr4:55030045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B85
`Chr4:55030137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B102,B58,C4,C62
`Chr4:55030145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,C41,C53,C61
`Chr4:55030169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B140,C32,C39,C42,C68
`Chr4:55030231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr4:55030279`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B84,B90,B92
`Chr4:55030907`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	D10
`Chr4:55030907`	`TGC`	`T`	2bp_deletion	CDS_variant	1	D10
`Chr4:55030989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809170.1

341 aa

170

341

GUB_WAK_bind

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

PF13947 GUB_WAK_bind 26-92 aa PF12678 zf-rbx1 289-334 aa PF13639 zf-RING_2 291-334 aa PF17123 zf-RING_11 292-320 aa PF13445 zf-RING_UBOX 292-331 aa PF00097 zf-C3HC4 292-333 aa PF13923 zf-C3HC4_2 292-333 aa PF12861 zf-ANAPC11 302-336 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809170.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	26	92	3.9e-11	43.9	Wall-associated receptor kinase galacturonan-binding
`XP_057809170.1`	Pfam	`PF12678`	zf-rbx1	Domain	289	334	8.7e-11	42.6	RING-H2 zinc finger domain
`XP_057809170.1`	Pfam	`PF13639`	zf-RING_2	Domain	291	334	4.7e-14	53.1	Ring finger domain
`XP_057809170.1`	Pfam	`PF17123`	zf-RING_11	Domain	292	320	1.7e-06	28.3	RING-like zinc finger
`XP_057809170.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	292	331	1.7e-05	25.4	RING-type zinc-finger
`XP_057809170.1`	Pfam	`PF00097`	zf-C3HC4	Domain	292	333	2.2e-06	28.1	Zinc finger, C3HC4 type (RING finger)
`XP_057809170.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	292	333	2.4e-08	34.4	Zinc finger, C3HC4 type (RING finger)
`XP_057809170.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	302	336	5.5e-08	33.4	Anaphase-promoting complex subunit 11 RING-H2 finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953187.1
ATGGGATTGTGCATAATAATCTATCTGCTGCTGTTGGCTCTCTTCAACATCTCAACAATCCTAGCACAAGATCTGTGCCCTTCTTTTCACTGCGGCAACGTCACGGTGCACTACCCTTTCAAATTGGAAGACGAGACGCCTCCAACTTGGAGCAGCTGCACCTACATCAACCTCAACTGCAACAGGGCCTCGAACGCCACCATTCTCAACCTCCCTCACTTGGGAGAATTCTACGTCCACAGGATCGACTACACTCAGCT...

CDS

1 records

下载 CDS FASTA

LOC131023641
ATGGGATTGTGCATAATAATCTATCTGCTGCTGTTGGCTCTCTTCAACATCTCAACAATCCTAGCACAAGATCTGTGCCCTTCTTTTCACTGCGGCAACGTCACGGTGCACTACCCTTTCAAATTGGAAGACGAGACGCCTCCAACTTGGAGCAGCTGCACCTACATCAACCTCAACTGCAACAGGGCCTCGAACGCCACCATTCTCAACCTCCCTCACTTGGGAGAATTCTACGTCCACAGGATCGACTACACTCAGCT...

Protein

1 records

下载 Protein FASTA

XP_057809170.1
MGLCIIIYLLLLALFNISTILAQDLCPSFHCGNVTVHYPFKLEDETPPTWSSCTYINLNCNRASNATILNLPHLGEFYVHRIDYTQLYIQLYDPRNCLTERLFDSSLSPPISSPFKAAYDNYTLYVCPLDFPVDPILCLSNSTNVTVAARGSFKDEHRCQATRTGPLPVYHDANFLFLTWDYDDCIKCKDSDDHDSGRKGSKIISKIVAVALTLPGLIIMSLTCCYVFCFHLMRMIGGRYVPDFAAVAAESGAAPLPSIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器