Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003944`

染色体: Chr04 坐标: 55031731-55039013 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003944`
名称	SmilChr04G003944
描述	histone-lysine N-methyltransferase ATX3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55031731 - 55039013 / `-`

ID 对照

NCBI Gene ID	`LOC131020804`
GeneID	`131020804`
locus_tag	`-`
NCBI Name	`LOC131020804`
原始查询	`SmilChr04G003944`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase ATX3-like
产物	histone-lysine N-methyltransferase ATX3-like
Arabidopsis	`AT3G61740` (SDG14) SET domain protein 14 [Source:NCBI gene (formerly Entrezgene);Acc:825347] identity=53.2; qcov=0.918; evalue=0; confidence=high
Rice	`Os01g0218800` (OsSET1) - identity=55.6; qcov=0.79; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00628 (PHD); PF00855 (PWWP); PF00856 (SET); PF13771 (zf-HC5HC2H); PF13831 (PHD_2); PF13832 (zf-HC5HC2H_2)
InterPro	-
eggNOG	-
NR	GeneID:131020804

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805815.1`
2	Nucleoplasm	核质	0.80000	`XP_057805815.1`
3	Nuclear body	核内小体	0.40000	`XP_057805815.1`
4	Chromosome	染色体	0.00000	`XP_057805815.1`
5	Centromere	着丝粒	0.00000	`XP_057805815.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55031952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr4:55032309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr4:55032339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr4:55033070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B41,C83,C9
`Chr4:55033303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B84,B90,B92,C83
`Chr4:55033359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B102,C38,C83
`Chr4:55033431`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B136
`Chr4:55033431`	`TC`	`T`	1bp_deletion	CDS_variant	1	B136
`Chr4:55034296`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B15,B86,C40,C5,C7
`Chr4:55034682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B133,B18,B33,C57
`Chr4:55034862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B17,C7
`Chr4:55035062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805815.1

1049 aa

524

1049

PWWP

PHD

PHD_2

zf-HC5HC2H_2

zf-HC5HC2H

SET

PF00855 PWWP 244-339 aa PF00628 PHD 430-480 aa PF13831 PHD_2 626-660 aa PF13832 zf-HC5HC2H_2 667-779 aa PF13771 zf-HC5HC2H 689-780 aa PF00856 SET 918-1023 aa

XP_057805816.1

1048 aa

524

1048

PWWP

PHD

PHD_2

zf-HC5HC2H_2

zf-HC5HC2H

SET

PF00855 PWWP 244-339 aa PF00628 PHD 430-480 aa PF13831 PHD_2 626-660 aa PF13832 zf-HC5HC2H_2 667-779 aa PF13771 zf-HC5HC2H 689-780 aa PF00856 SET 917-1022 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805815.1`	Pfam	`PF00855`	PWWP	Domain	244	339	1e-15	58.7	PWWP domain
`XP_057805815.1`	Pfam	`PF00628`	PHD	Domain	430	480	3.2e-10	40.6	PHD-finger
`XP_057805815.1`	Pfam	`PF13831`	PHD_2	Family	626	660	6e-13	48.7	PHD-finger
`XP_057805815.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	667	779	1.3e-26	93.6	PHD-zinc-finger like domain
`XP_057805815.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	689	780	3.3e-11	44.0	PHD-like zinc-binding domain
`XP_057805815.1`	Pfam	`PF00856`	SET	Family	918	1023	9e-24	84.7	SET domain
`XP_057805816.1`	Pfam	`PF00855`	PWWP	Domain	244	339	1e-15	58.7	PWWP domain
`XP_057805816.1`	Pfam	`PF00628`	PHD	Domain	430	480	3.2e-10	40.6	PHD-finger
`XP_057805816.1`	Pfam	`PF13831`	PHD_2	Family	626	660	6e-13	48.7	PHD-finger
`XP_057805816.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	667	779	1.3e-26	93.6	PHD-zinc-finger like domain
`XP_057805816.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	689	780	3.3e-11	44.0	PHD-like zinc-binding domain
`XP_057805816.1`	Pfam	`PF00856`	SET	Family	917	1022	9e-24	84.7	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949833.1
TGCAAAATCTTGGAGCCAAAGCTTGCTCTAAAAAATTTCAATTGTTTTGCGTAATTATTTCAAATTTTAATTTGTTTCAAAAGTTGAATTCGAATTAACTCTCTAATACACGTGCCTTCATTGATTCATTCATTCATACACTGATACACACACACATTATACTACAACTACTTTTGTAATTTTGTTTTATCTTTTTTCGCCTCTTGCAGTTCTCTGAAATTAAAGCCATTTAATCCCCTTTGTTGTTTTTTTCGTGATTC...

XM_057949832.1
TGCAAAATCTTGGAGCCAAAGCTTGCTCTAAAAAATTTCAATTGTTTTGCGTAATTATTTCAAATTTTAATTTGTTTCAAAAGTTGAATTCGAATTAACTCTCTAATACACGTGCCTTCATTGATTCATTCATTCATACACTGATACACACACACATTATACTACAACTACTTTTGTAATTTTGTTTTATCTTTTTTCGCCTCTTGCAGTTCTCTGAAATTAAAGCCATTTAATCCCCTTTGTTGTTTTTTTCGTGATTC...

CDS

2 records

下载 CDS FASTA

LOC131020804
ATGATCGGGAAGCGGCCTAGCAAAATCGGAATGCCGAAACTCAAGCGTTGCTCAGCGGAGAAAGAAGAAATCTCTGGTGGCAACGATGTCGGGAATTCATGCAGCGCCGCAGTCGATTCGAAGAAGATGAAGAAGATTACAAATCAGATGTATACAGTTCCTATAGTTCAAGTAGAAGGAAAGGACATTGATTTATCGAGTTATTGCCGCAAGATTGACACGTCATTCGTCAACAACAAGGTGAATTCGGTTGCTAAGGA...

Protein

2 records

下载 Protein FASTA

XP_057805815.1
MIGKRPSKIGMPKLKRCSAEKEEISGGNDVGNSCSAAVDSKKMKKITNQMYTVPIVQVEGKDIDLSSYCRKIDTSFVNNKVNSVAKEVPENKPPLLKSSRGRRQVLPTKFKDSILHPWKKEKLESGDDLESCLADNDECAEDVLRNKNSKREQPSTSYDDDIYLVKKKPKIERKLDFSLKNIILEPYYSSPSSMTSVNAAVSSVSTGVESGGKMNAYAGTRKTAKDKVTVKKADFYEPADFVMGDIVWAKCGKNFPAWPA...

XP_057805816.1
MIGKRPSKIGMPKLKRCSAEKEEISGGNDVGNSCSAAVDSKKMKKITNQMYTVPIVQVEGKDIDLSSYCRKIDTSFVNNKVNSVAKEVPENKPPLLKSSRGRRQVLPTKFKDSILHPWKKEKLESGDDLESCLADNDECAEDVLRNKNSKREQPSTSYDDDIYLVKKKPKIERKLDFSLKNIILEPYYSSPSSMTSVNAAVSSVSTGVESGGKMNAYAGTRKTAKDKVTVKKADFYEPADFVMGDIVWAKCGKNFPAWPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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