当前解析结果
SmilChr04G003949| 统一新 Gene ID | SmilChr04G003949 |
|---|---|
| 名称 | SmilChr04G003949 |
| 描述 | dynamin-related protein 5A-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55065723 - 55070890 / - |
| NCBI Gene ID | LOC131020810 |
|---|---|
| GeneID | 131020810 |
| locus_tag | - |
| NCBI Name | LOC131020810 |
| 原始查询 | SmilChr04G003949 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dynamin-related protein 5A-like |
| 产物 | dynamin-related protein 5A-like |
| Arabidopsis | AT5G42080 (DL1)dynamin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834213] identity=84.4; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0556100 (OsDRP1A)- identity=87; qcov=1; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule); GO:0008017 (microtubule binding); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00350 (Dynamin_N); PF01031 (Dynamin_M); PF02212 (GED) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020810 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057805823.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057805823.1 |
| 3 | Phragmoplast | Phragmoplast | 0.60000 | XP_057805823.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057805823.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057805823.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55066141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,A18,B104,C73,C82 |
Chr4:55066288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:55066490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C82 |
Chr4:55066547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C85,D5 |
Chr4:55066589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B81,B91 |
Chr4:55066796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:55066928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B17,C7 |
Chr4:55068013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr4:55068070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,C48,D10 |
Chr4:55068817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr4:55069507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B64,B85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805823.1PF00350
Dynamin_N 37-212 aa
PF01031
Dynamin_M 220-488 aa
PF02212
GED 513-605 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805823.1 |
Pfam | PF00350 |
Dynamin_N | Domain | 37 | 212 | 2.1e-55 | 188.0 | Dynamin family |
XP_057805823.1 |
Pfam | PF01031 |
Dynamin_M | Family | 220 | 488 | 1.2e-63 | 215.7 | Dynamin central region |
XP_057805823.1 |
Pfam | PF02212 |
GED | Family | 513 | 605 | 3.9e-22 | 79.0 | Dynamin GTPase effector domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。