当前解析结果
SmilChr04G003952| 统一新 Gene ID | SmilChr04G003952 |
|---|---|
| 名称 | SmilChr04G003952 |
| 描述 | aspartyl protease family protein 2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55080439 - 55082451 / - |
| NCBI Gene ID | LOC131020814 |
|---|---|
| GeneID | 131020814 |
| locus_tag | - |
| NCBI Name | LOC131020814 |
| 原始查询 | SmilChr04G003952 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease family protein 2-like |
| 产物 | aspartyl protease family protein 2-like |
| Arabidopsis | AT1G01300 (AT1G01300)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:839375] identity=68.6; qcov=0.991; evalue=0; confidence=high |
| Rice | Os01g0598600- identity=57.3; qcov=1.02; evalue=8.43e-162; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020814 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057805826.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057805826.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805826.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805826.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805826.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55080670 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | A8,C9 |
Chr4:55080670 |
AC |
A |
1bp_deletion | CDS_variant | 2 | A8,C9 |
Chr4:55080678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr4:55080698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr4:55080756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B4,B78,C10,C35 |
Chr4:55080792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,C71 |
Chr4:55080870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:55080936 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B19 |
Chr4:55080936 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B19 |
Chr4:55080938 |
C |
CGG |
2bp_insertion | frameshift_variant | 1 | B46 |
Chr4:55080938 |
C |
CGG |
2bp_insertion | CDS_variant | 1 | B46 |
Chr4:55080979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B58,B83,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805826.1PF00026
Asp 125-177 aa
PF14543
TAXi_N 126-291 aa
PF00026
Asp 203-465 aa
PF14541
TAXi_C 314-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805826.1 |
Pfam | PF00026 |
Asp | Domain | 125 | 177 | 1.4e-27 | 97.7 | Eukaryotic aspartyl protease |
XP_057805826.1 |
Pfam | PF14543 |
TAXi_N | Domain | 126 | 291 | 7.8e-55 | 186.5 | Xylanase inhibitor N-terminal |
XP_057805826.1 |
Pfam | PF00026 |
Asp | Domain | 203 | 465 | 1.4e-27 | 97.7 | Eukaryotic aspartyl protease |
XP_057805826.1 |
Pfam | PF14541 |
TAXi_C | Domain | 314 | 464 | 2.1e-36 | 125.9 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。