Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003958`

染色体: Chr04 坐标: 55111832-55114839 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003958`
名称	SmilChr04G003958
描述	uncharacterized SmilChr04G003958
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55111832 - 55114839 / `-`

ID 对照

NCBI Gene ID	`LOC131020819`
GeneID	`131020819`
locus_tag	`-`
NCBI Name	`LOC131020819`
原始查询	`SmilChr04G003958`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819267]; symbol=AT2G46550; hit=AT2G46550; species=arabidopsis; confidence=medium
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819267]; symbol=AT2G46550; hit=AT2G46550; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G46550` (AT2G46550) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819267] identity=37.6; qcov=1.03; evalue=3.28e-77; confidence=medium
Rice	`Os09g0363500` - identity=31.2; qcov=1.08; evalue=4.22e-53; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131020819

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057805832.1`
2	Nucleus membrane	核膜	0.60000	`XP_057805832.1`
3	Chromosome	染色体	0.00000	`XP_057805832.1`
4	Centromere	着丝粒	0.00000	`XP_057805832.1`
5	Chromatin	染色质	0.00000	`XP_057805832.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55112152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr4:55112157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B115
`Chr4:55112173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B37,C43,C70
`Chr4:55112317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:55112449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,C47
`Chr4:55112518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,C20,C65,C81
`Chr4:55112530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C38,C76,C83
`Chr4:55112560`	`T`	`TG`	1bp_insertion	frameshift_variant	99	A10,A11,A15,A18,A22,A25,A3,A4,A5,B101,B102,B103,B106,B107,B11,B110,B111,B112,B121,B125,B127,B129,B132,B133,B135,B138,B15,B16,B18,B2,B21,B22,B23,B24,B26,B29,B33,B34,B37,B4,B40,B45,B47,B49,B5,B52,B57,B59,B60,B61,B67,B69,B70,B71,B74,B76,B8,B83,B86,B88,B9,B93,B97,C10,C11,C14,C18,C2,C20,C27,C31,C36,C39,C40,C43,C45,C47,C49,C5,C52,C56,C58,C65,C67,C69,C7,C70,C75,C77,C78,C80,C81,C84,D1,D11,D2,D4,D5,D7
`Chr4:55112859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,D10
`Chr4:55112860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B23,C61,C64,C66
`Chr4:55112977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B94,C53
`Chr4:55113040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057949854.1
TACGTGGTGCGAAGTTTTGCACGTGAAAGGGAGAAGGTAATAAACCGACAGCAGTAAAATAATAACTGAAAAAAGCCAATCCAACTCACCTCTCTCTCTCTCTCTCAGACATAAAAGATGAGGAATTTCGGTAACTTATAGAGATCAACCACATTAGATTCATTCGGATCCACATCCATATCCATTTTTCTCTCTCTAATCAAGCTCATTTTGAAAGGAATCATACGAGAGATCTTGTTAGGGAGATGTAGAGAGATCTT...

XM_057949849.1
GAGAAGGTAATAAACCGACAGCAGTAAAATAATAACTGAAAAAAGCCAATCCAACTCACCTCTCTCTCTCTCTCTCAGACATAAAAGATGAGGAATTTCGGTAACTTATAGAGATCAACCACATTAGATTCATTCGGATCCACATCCATATCCATTTTTCTCTCTCTAATCAAGCTCATTTTGAAAGGAATCATACGAGTTAGTTTCATACTACCTGAGTTTATTGTCTGAATTTAAGGATGATCGCGATTATAACCTAC...

CDS

7 records

下载 CDS FASTA

LOC131020819
ATGGCGCTAGCAGAGGCGAGGGCGGCCTGGCAGAGAACTGCCAACAGGTGCTTGGTCCAAGAAGACGCGAAAAGAGCTCCCAAATTGGCTTGCTGCTCGTCAGTGTCGCCTTCTGCTAAACACGCTGAAACGGAGCCAGCAAATGCAGCTGGCGGCCAAGATGTTCCCAGCTCCAACTCCTCCCCGTTTCATCGTACTCCTTCGTATTCTAATTTATCCCCCAACACAAAATGGTGGCTGCAGACACGACCAAATTACGG...

Protein

7 records

下载 Protein FASTA

XP_057805832.1
MALAEARAAWQRTANRCLVQEDAKRAPKLACCSSVSPSAKHAETEPANAAGGQDVPSSNSSPFHRTPSYSNLSPNTKWWLQTRPNYGCQRGLNDDCRIHESSGDMARSEEEYELVDQCKNLVTCEKKGIEVEEEKLRPIYHQNWQDPMRVEFEEDLEELRDMFIVSSEGSKSSGDLYFESESSWVRTEKNIPWWRTADTEELAFLVAQKSVDLIENCDLPSPQNVNAKKTPSSTLTCPSHSEISSSLPLRKSGIAGYHSY...

XP_057805833.1
MALAEARAAWQRTANRCLVQEDAKRAPKLACCSSVSPSAKHAETEPANAAGGQDVPSSNSSPFHRTPSYSNLSPNTKWWLQTRPNYGCQRGLNDDCRIHESSGDMARSEEEYELVDQCKNLVTCEKKGIEVEEEKLRPIYHQNWQDPMRVEFEEDLEELRDMFIVSSEGSKSSGDLYFESESSWVRTEKNIPWWRTADTEELAFLVAQKSVDLIENCDLPSPQNVNAKKTPSSTLTCPSHSEISSSLPLRKSGIAGYHSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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