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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003988

染色体: Chr04 坐标: 55297809-55302044 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003988
名称SmilChr04G003988
描述calcium-dependent protein kinase 26
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向55297809 - 55302044 / -

ID 对照

NCBI Gene IDLOC131020853
GeneID131020853
locus_tag-
NCBI NameLOC131020853
原始查询SmilChr04G003988

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 26
产物calcium-dependent protein kinase 26
ArabidopsisAT2G17290 (CPK6)
Calcium-dependent protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816235]
identity=82.7; qcov=0.987; evalue=0; confidence=high
RiceOs04g0584600 (OsCDPK13)
calcium-dependent protein kinase 13-like [Source:NCBI gene (formerly Entrezgene);Acc:4336783]
identity=76.9; qcov=1.01; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:131020853

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057805879.1
2 Cell membrane 细胞膜 0.80000 XP_057805879.1
3 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057805879.1
4 Trans-golgi network Trans-golgi network 0.20000 XP_057805879.1
5 Nucleus 细胞核 0.00000 XP_057805879.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:55299053 G A EMS_canonical_SNV CDS_variant 4 B10,B134,B140,D4
Chr4:55299820 G A EMS_canonical_SNV CDS_variant 3 B42,C28,C35
Chr4:55300633 G A EMS_canonical_SNV CDS_variant 1 B21
Chr4:55300801 AAG A 2bp_deletion frameshift_variant 1 C17
Chr4:55300801 AAG A 2bp_deletion CDS_variant 1 C17
Chr4:55300911 G A EMS_canonical_SNV CDS_variant 2 B65,C49
Chr4:55301009 CAT C 2bp_deletion frameshift_variant 178 A1,A11,A13,A14,A19,A20,A21,A23,A24,A25,A3,A4,A5,A6,A8,A9,B102,B104,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B13,B130,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B19,B2,B21,B22,B23,B24,B25,B26,B28,B30,B31,B32,B34,B36,B39,B4,B40,B41,B42,B44,B45,B47,B49,B5,B50,B51,B54,B57,B58,B6,B60,B61,B65,B67,B68,B69,B7,B71,B72,B73,B74,B75,B77,B80,B81,B82,B83,B84,B85,B89,B91,B94,B95,B96,B97,B99,C10,C11,C13,C15,C16,C17,C18,C19,C24,C25,C27,C28,C29,C30,C31,C34,C36,C37,C38,C39,C4,C40,C41,C45,C46,C47,C48,C49,C5,C50,C51,C54,C55,C56,C57,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C71,C72,C73,C74,C77,C78,C79,C8,C81,C82,C85,C86,C87,C9,D10,D11,D2,D3,D4,D7,D9
Chr4:55301012 T TGC 2bp_insertion frameshift_variant 178 A1,A11,A13,A14,A19,A20,A21,A23,A24,A25,A3,A4,A5,A6,A8,A9,B102,B104,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B13,B130,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B19,B2,B21,B22,B23,B24,B25,B26,B28,B30,B31,B32,B34,B36,B39,B4,B40,B41,B42,B44,B45,B47,B49,B5,B50,B51,B54,B57,B58,B6,B60,B61,B65,B67,B68,B69,B7,B71,B72,B73,B74,B75,B77,B80,B81,B82,B83,B84,B85,B89,B91,B94,B95,B96,B97,B99,C10,C11,C13,C15,C16,C17,C18,C19,C24,C25,C27,C28,C29,C30,C31,C34,C36,C37,C38,C39,C4,C40,C41,C45,C46,C47,C48,C49,C5,C50,C51,C54,C55,C56,C57,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C71,C72,C73,C74,C77,C78,C79,C8,C81,C82,C85,C86,C87,C9,D10,D11,D2,D3,D4,D7,D9
Chr4:55301145 G A EMS_canonical_SNV CDS_variant 1 A11
Chr4:55301232 C T EMS_canonical_SNV CDS_variant 3 A1,C17,C60
Chr4:55301235 C T EMS_canonical_SNV CDS_variant 2 A1,C17
Chr4:55301301 G A EMS_canonical_SNV CDS_variant 2 B20,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805879.1
557 aa
N
1
278
557
Pkinase
PK_Tyr_Ser-Thr
Kdo
EF-hand_8
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
EF-hand_8
EF-hand_5
EF-hand_1
C
PF00069 Pkinase 90-348 aa PF07714 PK_Tyr_Ser-Thr 92-343 aa PF06293 Kdo 166-236 aa PF13833 EF-hand_8 380-418 aa PF13202 EF-hand_5 396-418 aa PF00036 EF-hand_1 396-422 aa PF13405 EF-hand_6 396-424 aa PF13499 EF-hand_7 396-455 aa PF13833 EF-hand_8 411-455 aa PF13202 EF-hand_5 432-453 aa PF13499 EF-hand_7 465-527 aa PF13405 EF-hand_6 468-492 aa PF00036 EF-hand_1 469-492 aa PF13202 EF-hand_5 470-490 aa PF13833 EF-hand_8 471-488 aa PF13833 EF-hand_8 483-528 aa PF13202 EF-hand_5 502-526 aa PF00036 EF-hand_1 502-528 aa
XP_057805880.1
557 aa
N
1
278
557
Pkinase
PK_Tyr_Ser-Thr
Kdo
EF-hand_8
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
EF-hand_8
EF-hand_5
EF-hand_1
C
PF00069 Pkinase 90-348 aa PF07714 PK_Tyr_Ser-Thr 92-343 aa PF06293 Kdo 166-236 aa PF13833 EF-hand_8 380-418 aa PF13202 EF-hand_5 396-418 aa PF00036 EF-hand_1 396-422 aa PF13405 EF-hand_6 396-424 aa PF13499 EF-hand_7 396-455 aa PF13833 EF-hand_8 411-455 aa PF13202 EF-hand_5 432-453 aa PF13499 EF-hand_7 465-527 aa PF13405 EF-hand_6 468-492 aa PF00036 EF-hand_1 469-492 aa PF13202 EF-hand_5 470-490 aa PF13833 EF-hand_8 471-488 aa PF13833 EF-hand_8 483-528 aa PF13202 EF-hand_5 502-526 aa PF00036 EF-hand_1 502-528 aa
XP_057805881.1
557 aa
N
1
278
557
Pkinase
PK_Tyr_Ser-Thr
Kdo
EF-hand_8
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
EF-hand_8
EF-hand_5
EF-hand_1
C
PF00069 Pkinase 90-348 aa PF07714 PK_Tyr_Ser-Thr 92-343 aa PF06293 Kdo 166-236 aa PF13833 EF-hand_8 380-418 aa PF13202 EF-hand_5 396-418 aa PF00036 EF-hand_1 396-422 aa PF13405 EF-hand_6 396-424 aa PF13499 EF-hand_7 396-455 aa PF13833 EF-hand_8 411-455 aa PF13202 EF-hand_5 432-453 aa PF13499 EF-hand_7 465-527 aa PF13405 EF-hand_6 468-492 aa PF00036 EF-hand_1 469-492 aa PF13202 EF-hand_5 470-490 aa PF13833 EF-hand_8 471-488 aa PF13833 EF-hand_8 483-528 aa PF13202 EF-hand_5 502-526 aa PF00036 EF-hand_1 502-528 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057805879.1 Pfam PF00069 Pkinase Domain 90 348 3.4e-76 256.8 Protein kinase domain
XP_057805879.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 92 343 1.6e-23 84.1 Protein tyrosine and serine/threonine kinase
XP_057805879.1 Pfam PF06293 Kdo Family 166 236 0.00011 22.4 Lipopolysaccharide kinase (Kdo/WaaP) family
XP_057805879.1 Pfam PF13833 EF-hand_8 Domain 380 418 3.5e-18 65.8 EF-hand domain pair
XP_057805879.1 Pfam PF13202 EF-hand_5 Domain 396 418 7.3e-23 79.7 EF hand
XP_057805879.1 Pfam PF00036 EF-hand_1 Domain 396 422 4e-33 111.2 EF hand domain
XP_057805879.1 Pfam PF13405 EF-hand_6 Domain 396 424 5.3e-26 88.5 EF-hand domain
XP_057805879.1 Pfam PF13499 EF-hand_7 Domain 396 455 1e-29 103.4 EF-hand domain pair
XP_057805879.1 Pfam PF13833 EF-hand_8 Domain 411 455 3.5e-18 65.8 EF-hand domain pair
XP_057805879.1 Pfam PF13202 EF-hand_5 Domain 432 453 7.3e-23 79.7 EF hand
XP_057805879.1 Pfam PF13499 EF-hand_7 Domain 465 527 1e-29 103.4 EF-hand domain pair
XP_057805879.1 Pfam PF13405 EF-hand_6 Domain 468 492 5.3e-26 88.5 EF-hand domain
XP_057805879.1 Pfam PF00036 EF-hand_1 Domain 469 492 4e-33 111.2 EF hand domain
XP_057805879.1 Pfam PF13202 EF-hand_5 Domain 470 490 7.3e-23 79.7 EF hand
XP_057805879.1 Pfam PF13833 EF-hand_8 Domain 471 488 3.5e-18 65.8 EF-hand domain pair
XP_057805879.1 Pfam PF13833 EF-hand_8 Domain 483 528 3.5e-18 65.8 EF-hand domain pair
XP_057805879.1 Pfam PF13202 EF-hand_5 Domain 502 526 7.3e-23 79.7 EF hand
XP_057805879.1 Pfam PF00036 EF-hand_1 Domain 502 528 4e-33 111.2 EF hand domain
XP_057805880.1 Pfam PF00069 Pkinase Domain 90 348 3.4e-76 256.8 Protein kinase domain
XP_057805880.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 92 343 1.6e-23 84.1 Protein tyrosine and serine/threonine kinase
XP_057805880.1 Pfam PF06293 Kdo Family 166 236 0.00011 22.4 Lipopolysaccharide kinase (Kdo/WaaP) family
XP_057805880.1 Pfam PF13833 EF-hand_8 Domain 380 418 3.5e-18 65.8 EF-hand domain pair
XP_057805880.1 Pfam PF13202 EF-hand_5 Domain 396 418 7.3e-23 79.7 EF hand
XP_057805880.1 Pfam PF00036 EF-hand_1 Domain 396 422 4e-33 111.2 EF hand domain
XP_057805880.1 Pfam PF13405 EF-hand_6 Domain 396 424 5.3e-26 88.5 EF-hand domain
XP_057805880.1 Pfam PF13499 EF-hand_7 Domain 396 455 1e-29 103.4 EF-hand domain pair
XP_057805880.1 Pfam PF13833 EF-hand_8 Domain 411 455 3.5e-18 65.8 EF-hand domain pair
XP_057805880.1 Pfam PF13202 EF-hand_5 Domain 432 453 7.3e-23 79.7 EF hand
XP_057805880.1 Pfam PF13499 EF-hand_7 Domain 465 527 1e-29 103.4 EF-hand domain pair
XP_057805880.1 Pfam PF13405 EF-hand_6 Domain 468 492 5.3e-26 88.5 EF-hand domain
XP_057805880.1 Pfam PF00036 EF-hand_1 Domain 469 492 4e-33 111.2 EF hand domain
XP_057805880.1 Pfam PF13202 EF-hand_5 Domain 470 490 7.3e-23 79.7 EF hand
XP_057805880.1 Pfam PF13833 EF-hand_8 Domain 471 488 3.5e-18 65.8 EF-hand domain pair
XP_057805880.1 Pfam PF13833 EF-hand_8 Domain 483 528 3.5e-18 65.8 EF-hand domain pair
XP_057805880.1 Pfam PF13202 EF-hand_5 Domain 502 526 7.3e-23 79.7 EF hand
XP_057805880.1 Pfam PF00036 EF-hand_1 Domain 502 528 4e-33 111.2 EF hand domain
XP_057805881.1 Pfam PF00069 Pkinase Domain 90 348 3.4e-76 256.8 Protein kinase domain
XP_057805881.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 92 343 1.6e-23 84.1 Protein tyrosine and serine/threonine kinase
XP_057805881.1 Pfam PF06293 Kdo Family 166 236 0.00011 22.4 Lipopolysaccharide kinase (Kdo/WaaP) family
XP_057805881.1 Pfam PF13833 EF-hand_8 Domain 380 418 3.5e-18 65.8 EF-hand domain pair
XP_057805881.1 Pfam PF13202 EF-hand_5 Domain 396 418 7.3e-23 79.7 EF hand
XP_057805881.1 Pfam PF00036 EF-hand_1 Domain 396 422 4e-33 111.2 EF hand domain
XP_057805881.1 Pfam PF13405 EF-hand_6 Domain 396 424 5.3e-26 88.5 EF-hand domain
XP_057805881.1 Pfam PF13499 EF-hand_7 Domain 396 455 1e-29 103.4 EF-hand domain pair
XP_057805881.1 Pfam PF13833 EF-hand_8 Domain 411 455 3.5e-18 65.8 EF-hand domain pair
XP_057805881.1 Pfam PF13202 EF-hand_5 Domain 432 453 7.3e-23 79.7 EF hand
XP_057805881.1 Pfam PF13499 EF-hand_7 Domain 465 527 1e-29 103.4 EF-hand domain pair
XP_057805881.1 Pfam PF13405 EF-hand_6 Domain 468 492 5.3e-26 88.5 EF-hand domain
XP_057805881.1 Pfam PF00036 EF-hand_1 Domain 469 492 4e-33 111.2 EF hand domain
XP_057805881.1 Pfam PF13202 EF-hand_5 Domain 470 490 7.3e-23 79.7 EF hand
XP_057805881.1 Pfam PF13833 EF-hand_8 Domain 471 488 3.5e-18 65.8 EF-hand domain pair
XP_057805881.1 Pfam PF13833 EF-hand_8 Domain 483 528 3.5e-18 65.8 EF-hand domain pair
XP_057805881.1 Pfam PF13202 EF-hand_5 Domain 502 526 7.3e-23 79.7 EF hand
XP_057805881.1 Pfam PF00036 EF-hand_1 Domain 502 528 4e-33 111.2 EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057949898.1
TATACGAATACCTTTGACTCAGTCCCCTTCTTTTTACATTTTTTTCCGGTAATGCTCGAAGATTATCTCAAGATCCCCGTTTTCCCCTTCTCCTCTACAAAGACTCTTCCTTTTCCTCTCTATTAATCCATCTCTGCATATGCTTATATGATCTGTAAAAAAGGGGATTGACGCGGAGAATAATTGGATGGTGGAAAGGGCTGGAGAGGAAGTGAGGAACGAGAGCGAGGTTGTTTGATGGGCAATACATGCCGTGGATC...
XM_057949896.1
TATACGAATACCTTTGACTCAGTCCCCTTCTTTTTACATTTTTTTCCGGTAATGCTCGAAGATTATCTCAAGATCCCCGTTTTCCCCTTCTCCTCTACAAAGACTCTTCCTTTTCCTCTCTATTAATCCATCTCTGCATATGCTTATATGATCTGTAAAAAAGGGGATTGACGCGGAGAATAATTGGATGGTGGAAAGGGCTGGAGAGGAAGTGAGGAACGAGAGCGAGGTTGTTTGATGGGCAATACATGCCGTGGATC...

CDS

3 records

下载 CDS FASTA
LOC131020853
ATGGGCAATACATGCCGTGGATCATTGGGAGGCAAACCTTTTGAGGGGTACACGGAGCCCGAAGAGCAGCTGAATTCGAAGCGCACGGCGTCTTCCGCCCCCTCCCGGAGCAACTCCCCCACCGAGAAAGACACCCAGCCAAGCCAGAAAAAGGAGCCGAGTTTGCCACCTCTAATCAGTCCCAGCAAAGAGAGCATCATGACCCGCGGCATGGCTAACCAGACCTACTTTGTTATGGGCCACAAGACTGCTAACATCCG...
LOC131020853
ATGGGCAATACATGCCGTGGATCATTGGGAGGCAAACCTTTTGAGGGGTACACGGAGCCCGAAGAGCAGCTGAATTCGAAGCGCACGGCGTCTTCCGCCCCCTCCCGGAGCAACTCCCCCACCGAGAAAGACACCCAGCCAAGCCAGAAAAAGGAGCCGAGTTTGCCACCTCTAATCAGTCCCAGCAAAGAGAGCATCATGACCCGCGGCATGGCTAACCAGACCTACTTTGTTATGGGCCACAAGACTGCTAACATCCG...

Protein

3 records

下载 Protein FASTA
XP_057805879.1
MGNTCRGSLGGKPFEGYTEPEEQLNSKRTASSAPSRSNSPTEKDTQPSQKKEPSLPPLISPSKESIMTRGMANQTYFVMGHKTANIRDLYVLGHKLGQGQFGTTYLCTEIATSFQFACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCNGGELFDRIIQRGHYSEQKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFTDVVGSPYYVAP...
XP_057805880.1
MGNTCRGSLGGKPFEGYTEPEEQLNSKRTASSAPSRSNSPTEKDTQPSQKKEPSLPPLISPSKESIMTRGMANQTYFVMGHKTANIRDLYVLGHKLGQGQFGTTYLCTEIATSFQFACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCNGGELFDRIIQRGHYSEQKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFTDVVGSPYYVAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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